RnoALTA0041921-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009156 | Tra2a
Description
transformer 2 alpha homolog [Source:RGD Symbol;Acc:1562563]
Coordinates
chr4:78906377-78907217:-
Coord C1 exon
chr4:78907083-78907217
Coord A exon
NA
Coord C2 exon
chr4:78906377-78906441
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
GCTCTCATTTTTTACAGAAGAAG
3' ss Score
-1.91
Exon sequences
Seq C1 exon
CAGTGGTGGTGGAGGTGGCGGAGGAGGAGGTGGTGGCGGCGGTGGTGGTGGAGGTGGTAGACGGCGAGATTCTTACTACGATAGAGGATATGATCGAGGCTATGACAGATATGAAGATTATGATTACCGGTACAG
Seq A exon
NA
Seq C2 exon
AAGGTCGCCTTCTCCTTACTACAGTCGCTACAGGTCACGATCAAGATCCCGTTCCTATAGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009156-21-17,21-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=NA C2=0.917
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTAGACGGCGAGATTCT
R:
TGTAGTAAGGAGAAGGCGACCT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]