BtaALTA0031588-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12513398-12513881:+
Coord C1 exon
chr22:12513398-12513559
Coord A exon
chr22:12513674-12513688
Coord C2 exon
chr22:12513689-12513881
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
3' ss Seq
GCCAGCGCCCTCCTGCTCAGCCC
3' ss Score
3.29
Exon sequences
Seq C1 exon
GCACATAGGACAGCCCAACGAAGCCCTGAAGTTCCTAAACAAAGCACGCAAGGACACTGCTTGGGGCCAGAGTGCCACCTACCACATGGTGCAGATCTGTCTGAACCCAGACAACGAGATCGTGGGCGGAGAGGCTTTCGAGAACCTGGTGACCGAGAGCAA
Seq A exon
CCCCAGTGCCCGCAG
Seq C2 exon
CTTCAGCAGCAGGAAGGAGTTGGAGCAACATGGCGTGCGCACCGCCGAGAAGCTGCTGCGGGAGTTCTACCCACACTCGGCCGGGGGCCATACCCAGCTGCGGCTGCTGCAGAGCCTGTGCCTGCTGGCGACCAGGGAGAAGGCCAACGTGGAAGTGGCGCTGAGCACCTTCGTTGAGATGGCCCAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477-25-35,25-34,25-33-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF145591=TPR_19=PU(58.8=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTGCCACCTACCACATG
R:
CAACTCCTTCCTGCTGCTGAA
Band lengths:
117-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development