BtaINT0154292 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12513398-12513881:+
Coord C1 exon
chr22:12513398-12513559
Coord A exon
chr22:12513560-12513688
Coord C2 exon
chr22:12513689-12513881
Length
129 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
3' ss Seq
CTCAGCCCCAGTGCCCGCAGCTT
3' ss Score
0.75
Exon sequences
Seq C1 exon
GCACATAGGACAGCCCAACGAAGCCCTGAAGTTCCTAAACAAAGCACGCAAGGACACTGCTTGGGGCCAGAGTGCCACCTACCACATGGTGCAGATCTGTCTGAACCCAGACAACGAGATCGTGGGCGGAGAGGCTTTCGAGAACCTGGTGACCGAGAGCAA
Seq A exon
GTGAGGGCCCAGCTGGCTGGGGCTGGGGAGGGAAGGCAGGGAAAGCCCTCGGCCTCTGGATTGAGGTCTGGCGAGGGCCTCGTGGGCAGACCAGGCCAGCGCCCTCCTGCTCAGCCCCAGTGCCCGCAG
Seq C2 exon
CTTCAGCAGCAGGAAGGAGTTGGAGCAACATGGCGTGCGCACCGCCGAGAAGCTGCTGCGGGAGTTCTACCCACACTCGGCCGGGGGCCATACCCAGCTGCGGCTGCTGCAGAGCCTGTGCCTGCTGGCGACCAGGGAGAAGGCCAACGTGGAAGTGGCGCTGAGCACCTTCGTTGAGATGGCCCAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF145591=TPR_19=PU(58.8=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTGCCACCTACCACATG
R:
CACTTCCACGTTGGCCTTCTC
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]