DreINT0169090 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50118006-50119639:-
Coord C1 exon
chr9:50119478-50119639
Coord A exon
chr9:50118202-50119477
Coord C2 exon
chr9:50118006-50118201
Length
1276 bp
Sequences
Splice sites
5' ss Seq
GGGGTGATG
5' ss Score
-0.12
3' ss Seq
TGTGTTTTGGTTGAGTTCAGGAA
3' ss Score
4.07
Exon sequences
Seq C1 exon
GTACACTGGTGAACCCAACGATGGGTTGCGTCACTTTAACAAAGCCCGAAAAGACAATGACTGGGGCCAGAACGCAGTTTACAACATGATTGAGATTTGCCTCAACCCTGACAACGAAACCATCGGAGGAGAAGTGTTTGAGAACCTGGACGGAGACATGGG
Seq A exon
GTGATGTGTTTTTAATTTTCTTTTTGTAAAATCTAAAATCAAGATTAAAGGGCTATTTTACCCCTTTTACAAGATGTAATGTATGTATATTGTATCTCCAGAATGTGTCTGTAAAGCTTCAGCTCAAAAACCATCAGATTATTTATTATACAATGCTTACAATGCCCATTTTGAGGTCAGAGGAAAGAGTAGTTGTTTTTGTAGCCTGTGCCTTTAAATGCAAATGAGACCGTTCTGCCCACCTCTGCCCCCTCTGTTCCTACATGCGTGTCTGCTTCCACTGCAGCATGTGAGATAAACAGCAGTCAGTGACAGAGACAGGCACAAATGAAATGGAAATGCAGTTTATTAGTCAAAATACAAAGTAATTAATAATAATATAAACTTATTTAATGCATTTGTTGTGGAGTTTATTCAAGCCTTTCTGCAATGATGAGTCACACACAAATGCTGCTACAAAGTACGCAGTCGACACACGCACACACACTTTTAACTCTGAACTGTTTTTGCACGTCTACTTGTGGCAATTGTGACAGGATACAAGTTAATATACACTGCTATATGGATATCCAGTGTGCTACTGTACAAAATAAATCAATTTCTGTGTGGAGTTTGCATGCTCATCCCATGTTAGCGTGGGTTTCCTCCGGGTGCTCCGGTTTCTCCCACAGTCCAAAGACATGCGCTATAGGTGAATTGAATACGCTAAATTGTCTGTAGTGTATGTGTGTGAGTGAGTGTGTATGGATGTTTCCCAGTGATGGGTTGCAGCTGGAAGGGGCATTCGCTGCGTTAAACATATGCTGGATAAGTTGGCGGTTCATTTCGTTGTGGTGACCCACTGATTAATAAAGGCACTAAGCCAAAAAGAAAATAAATGAATGACAATAAACCAGATTTAATGTCCACAAATCAGGCTCCTGTTGTGTGTTTGACGCATCGGAGAGTTAAACAGATCTTTTAATTCCAGTTTCTTTGCAAATCCTGTTCTGTGAACTTGTTTATATGCGTTAATACGGATACTTAATTAATTACAGTGGGGAAAACTGTAATCCTGCATTGTGGTGGGCCTTAAAATTGCTGGGATTTGGATCCTATTTTAACATCAGAAAACTTTTAAAAAGAGACTTATTGTGTTTCTATCGCTTTAATACAATAGTGAACACACTATACCTTCACACAGCTCTGTTCAAACAGCTTCCAAAAGTTGATTTGGCATCAAAGGTGCCCTTTAATGTACCAATACTGATAGTGCATGTGTTTTGGTTGAGTTCAG
Seq C2 exon
GAACTCCACTGAGAAGCAGGAGTCCGAGCAGCTGGCTGTGAGAACAGCAGAGAAACTCTTAAAGGAGCTGAAGCCACAAACCCCTGTGGGACACGTTCAACTGCGCATCCTGGAGAACTACTGCTGTCTGGCCACCAAACAGAAGGCCAATGTGGAAAGAGCTCTCAACGTCTTTATCGAGATCGCAAACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.197
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGATGGGTTGCGTCACTTT
R:
CTCAGTGTTTGCGATCTCGAT
Band lengths:
342-1618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]