BtaINT0154320 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30503528-30506185:+
Coord C1 exon
chr2:30503528-30503689
Coord A exon
chr2:30503690-30505989
Coord C2 exon
chr2:30505990-30506185
Length
2300 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TTATTTTTAATTGTATACAGTAA
3' ss Score
4.78
Exon sequences
Seq C1 exon
GTATACTGGAGAACCAAATGATGCCCTTCGACATTTTAATAAAGCTCGGAAAGACAGTGACTGGGGCCAAAATGCCCTTTATAATATGATAGAAATCTGTTTGAATCCAGATAATGAAACTGTTGGAGGCGAAGTATTTGAAAATCTGGATGCAGATCTGGG
Seq A exon
GTGAGTAGTAGTTGACAAGATACACTTTAAAAAAAAAACAAAAAACACTTGTTAGGGGCAAATAAGCAAGGGTGTTTTATAAGGAGAACTAAATTCCAGGAGAGCACTAATGAAAGTTTAGTGAATAAATCAGCTGGAATAACTCTTCTCTGAAACAAGTATGAAATGCTTATAGGTTTCCTAAATCAGAATAGATGTTATTAAAGACAGCCCCCCAATTACTCTGTAAAAAATGGGATGAATTGTAGAGTTTGATTACTTAGGAAAAAATTGCCCACATAACAGTAACTTCCTAACATGATAGCTATCTGCCAAACCCTGTGCTCTATACTTTATTAACACACTGTCTTATTAATATTTATTCCCTATTACAGCATTGTGAAAAAGCTCAGAGTTAACCTGTCTAGTGTGATGGAGTTAGAATACAGTGGAGGCAAGCTTTAGGTTGAGTCCTACCTGGCCTCAGCCACCTGCTGCGAGCCTTGTGGTGCAGCCCTGGCCAGGAGCTGTGTTTCTGTCAGTGTGTGTTTGTGGAAGGCAGGAGGGCAGCGTAAGGATGTAAAGGGAATAGAAGAGACGGTTTCTGCCTCCAGGAACATGCGATTGACCTGGTAGGCAAGACAGTATCTGAAACCATTCACTCTCCAACAAAACAGAAATGGGTTAAATTGATGTTAAGTGTTGGAGGAATTCATAGAAATCATAGCAGTCAGGGGAAGCTGCATAGAGGAGTGGGAGAAAACAGGACCCAGTTGCTGAGATGTGTCAGTGACAACTTTGAAGGCTTGGATTATAGAGGCCCACTGAAGGATTTACAGTAAGGGAGAGGCATTTTTATTTTTTGTTTGTTTTAGAAAGGTTAAAGTATCCTGCTGTTGTTATGCAACTAAAGGCTGTCCACATGGAAATCTTCAGCCATGGGTTGAAAACACCAAACTCAGAATATAGAACTCAAAAGGGAAGTCACAGCTGGAGTTACAGATTTGGGGGACCAGTGCTGAGTGGGTAGTCGGGACCCCATGAATGACCTGTTTTCAAGTAGAATGCAGTAACGGAAGTCTAAGACCTAAATTTGGGGTGTGCTAACATTCAAGGAGATTGGAGGAGGAAGAGAGGTAAGGAAAGGACAATGACTTTGGTGGGGAGAGAAGGAAAACTGTAATCTTAACAAAAAACAAAGAAGAGGAGCTTGGGAGAAGGTTACCAACAGTGTAAAATCTTTTAGAGAAGGTAAAAGAAAAGCCTGAGAAGATCAGTGGCTTCAGTGATTAGTGAAAGTGAAAGTGAAGTAGCTCAGTCGTGTCTGACTCTTTGCAACCTTGTGGACTGTAGCGTACCAGACTCCTCCCTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCACTTCCTTCTCCAGATCTTCCTGACCCAGGGATCGAACCCTGGTCTCCCGCATTGCAGGCAGACGCTTTAACCTCTGAGCCACCAGGGAAGCCCAGTGATTATTAGGCTTTGAGAATTTAATTTCCTTTTGTTAATTGATTTACTAATACATTATATTCAGGTGTGGGTCAGTATATAAGAAAATTGCTATTGCACAAATTGTTATTGCACTTAAAATGTACAACCTTTTGACAAATACAGAATTTCTTTTCTTAAAAGTCTAATAGGCAACAGGGAGAGGAAAATTAAGTACACTTTATATGTCTGCAAACTTAGATTCAAATCCTAGGTTTAATATAGATATGTGACCTTTGGAAAATTAATACTTTCTCTATTGGAGCCTTGGTTTTCTCATATATAAAATGGATTCAACATTGATTGAATGAAGTAATACAGTGCTTGGCACATAGTAAGAACTTTAACATAGTAACTTTCTGCTCCCTCCTTTTTAAAGATTAATTTTTTAAAATTGAAGTACAGTTGATTTACAGTATTTTATAGTCTTTTTTTTTTTCATTTTCTGAGCAAATATGCTATTTGATAATTGGATGATTCTACTTATCCTGAATTCAGTTTTGTATTAGTGAAATGAATACACTTACCACAGGTAGATAGTATCCAGTTTTTGTTTTCAATTTAAAGTGAATAAATGTCTAATGATGTTTGATTGAAGCTATGTTAGTTTTGTTTTTTTTAAACTAACTGTGCTTTAATTTATATTAGAAAAGAATAAGTGACGTTCTTCAATAGGATTAGTTTTAAATTGGTGAGAAAAGTAGAAACCAGTGTACCCTCGAGCTCATTCTAATCTCAATGAATTTTGTTTCATGAGTAGTAGATATTAACAGATTTATTTTTAATTGTATACAG
Seq C2 exon
TAATTCAACTGAGAAGCAAGAGTCTGTGCAGTTAGCAGTGAGAACAGCAGAAAAGCTCCTTAAAGAACTAAAACCTCAGACTGTTCAGGGTCAAGTACAGCTTCGCATAATGGAAAACTATTGCCTGATGGCCACCAAACAGAAATCTAATGTGGAGCAGGCACTGAATACCTTCACTGAAATAGCAGCATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512:ENSBTAT00000005682:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134321=TPR_16=PU(31.6=27.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]