GgaINT0048255 @ galGal4
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19179364-19180144:+
Coord C1 exon
chr7:19179364-19179525
Coord A exon
chr7:19179526-19179948
Coord C2 exon
chr7:19179949-19180144
Length
423 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CAAATGGTTTATGATAACAGTAA
3' ss Score
-0.28
Exon sequences
Seq C1 exon
GTATACAGGTGAACCAAATGACGCACTCCGCCACTTTAATAAAGCTCGAAAGGACAATGACTGGGGACAGAATGCAGTCTACAACATGATTGAAATTTGTTTGAACCCAGATAATGAAACTATAGGTGGTGAAGTCTTTGAAAATCTGGATGCTGACATAGG
Seq A exon
GTAAGTGAATGAAGTAAATACTGCTTGGATTATTCTATTATCTCACCCCCCTACCTCTTAATCACGTTTCTTGATCACGTAAATTGTTAGAATTTTGAGGTCACCTAATGCTTTGAGTACTCTACCTACAAGATGAGAAGCAATTCTGAGCTGCAAAATAAATCATCGTTAAGCAGAAAGTGTAGAGGATTTTACCTGGAATCCTAGGCTCTTGAAGCTTTGGTTAAAAGATAGGTTGTAGACAGATTGGAACTGCTATTGTTACAGGAGAGAATGTAGAATGCCTGTATAACAGATGCATGCTTTTATCACATTATTATGGGTCCTGTGTGCACTTGTAATTTATTTGACAAATACAAATGTAATTTTATATACAAAGGTAAATATTTAAACTTTTTTTTTACAAATGGTTTATGATAACAG
Seq C2 exon
TAATTCAACAGAGAAGCAGGAGTCTGTGCAGTTGGCTGTAAGAACAGCAGAAAATCTTCTGAAGGAACTCAAGCCTCAGACCATTCAGGGCCACATTCAGCTGCGAATCATGGAAAATTATTGTCTCATGGCAACCAAACAGAAATCAAACGTCGAACGAGCACTGAACACTTTCACTGAAATAGTAGTGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000038446:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0771912=TPR_2=PD(62.5=36.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTGAACCAAATGACGCA
R:
CTCAGCCACTACTATTTCAGTGA
Band lengths:
354-777
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]