RnoINT0157592 @ rn6
Intron Retention
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52299088-52302339:-
Coord C1 exon
chr3:52302178-52302339
Coord A exon
chr3:52299284-52302177
Coord C2 exon
chr3:52299088-52299283
Length
2894 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TGTATCCTTCCTGTCCGCAGCAC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GTATACTGGAGAACCAAATGATGCCCTTCGACATTTTAATAAAGCTCGGAAAGATAGTGACTGGGGTCAAAATGCACTTTATAATATGATAGAAATCTGCTTGAATCCAGACAATGAAACTATTGGAGGTGAAGTGTTTGAAAACCTGAATGGAGACCTGGG
Seq A exon
GTGAGTAGCATTTTACATTTTTCTTTTGGAACCATTGTTTTTATTAGATATATTTCTTTACTTACATTTCAAACGTTATCTCCCTTCCCAGTTTCCTGTCCATAAGCCCCCATCCCCTCCCCTCCCCGTCCCCCATATAGGTATTCCCCCTATACATCCCCCTTACTGCCCCCCCATATTCCCCTGCACTGGGGGTCCAACCTTGGCAGGACCAAGGGCTTCCCCTTCCCCTGGTGCCCCAACATGGCTATTCTCTGCTACATATGCAGTCAGAACCCTGGGTTAGTCCATGTATAGTCTTTCAGTAGTGGTTTACCATTTATAAAACATACACTGGGAAAAATAAGCAGGAAGGCAAAAGAAAGTCACCTTCTAGCATAATGTTGAAGAAAAGGTACATTGAATATGTATATGATATACATTCATACTTAATACATGTAGAGAGACTAAAGTAATGATTCTCTCCATAGCAGTGTGATTGTTTGGATACTAGTAGCCTCCTCAGACTCATAGATTTGAATATTTGGTACCCAGTTGGTAGAACTGTTTGGGAAGGATTATGAGGTATGGCCTTGCTAGAGGAAGACTGTCACTCAGAGTAAGTTTTGAGGTTTCAAAGGGCTTGGGGGAGTCCCAGAGCTCTCTCTGCCCTGTGGTTTTGAAACAAGATGTGAGGTGTCAGCTCTGCTTCTCTGTGTCATCAGAGCCTTTAGCACTCTGAAAAACAGGAGCCAAATTTATTTTTTAAGTTGTCCTGGTCATAGTATTTTATCACAACAGTTAAAAAAAATAACAAACAATTAGGCATGAGATGCTTTCCATTTTCTAAAACATTAAAAAAATGGATTACAAAGGCATTCCCCTAATTCCTCTGTTACAAATAAAATAAATTACAGAATCTGAAAATCATAATACAAACTATCCACATAATAGTAGCAATGGCTGACCCTTGGGAGATGCCTCAGTAGACAGAGTGCTTGTCCCCCAAGTATGAGTATCAGTTCAAATCTCTGAGCCTGCATAAATGTTCTGTGGGCTTGGTGGCTGGCCTGTCACTCAGTAGCCAGAGGCAGGATCTGCAGAGCAAAGTGTCTTGGTAGACGGCTGTATAGGCGAACTCTAGGGATGAGAGGCTCTGCCTTAATAAATATAGAAGAGGGATGGAAGAACATTCCTGATGTCAGCCTGTGGCTGCCTTTCATTGGCATGTAATCCATTTTTAATGCAAGGCCATTCAGTTGCCCACACCACAAATAGTGATCTGCAAGGATGCTGCAGTGTTCAGTGCTGCAGGAGGGCACAGAGTCATGTACTGCATAGCTGTCAGTGGATGGTGCATGGAGCGGAGAGACATTAGAACAAGGAAGGACAATGTCAAGATTGGATTAGAGAGACCAGTAGAATTTAAGAGAGAAATGACCTGTTTTGTTTGTTTTAGGAATGTTAAGCTAATAAATATGCTATTGTATACCTGTGGGCACCCAAATGGAAACCCTCAATCGAACAGTTAAAAATGCAAACTAGAGCTCAGAGGCAGAGTAGTTAGTACACATGGAGATTTGGGAGACCTGAAAGAGTTGGGTGTGTGCGAAGGGCCTCTTTGCATGTTATATGTAACCATGGGAAACGGACTAGAGTTTGGGCATGTGAAGGCTAGAGGTCTCAAGGTCAAACATGAAAATCAAATTGTACAATCATGGAAGCCAAATCATACACAGAAATGATGTGGAGCAAGTAGTGGCTACCTTTCAGCAAAGAATGTGGCAGGAGCAAAGGGCTTGTTCAGTAAGATTAAAATCTCTAGGGCCTGTGCCAGATGACCCAGTGGTTAAGAGCAGAGGTGCTAAGAGGTGCTTGGCTCTTAGCACCCAAGTTGGTTGGCTCACAACTGTCTATAACTCTAGATCCATAGGGCAGCTATCACCTCTGTACTGTATTAACACACACACACACACACACACACACACACACACACACACACACACAGAGAGAGATACACACACGCACGTACACAGATACACACACACACACACAGATATACACACACACACACACACCACCACCACCACCACCACCACCACATATACATTAAAAGAAATCATTGTTTAAGAAAAAGCTTCAAGTATAAGGAAGGGTGAGTGATTTTACTGATGCATGAATCACTGCATGCACAAACGTGTGTGTGCATTCATGTGCAAGCATGTGTGTGTGTGTGTGTGTTGTGTATGTGTATGTGTAGGGAATTTGCAATCAAATATTTGAATTGTTATGATACCTGATATCTGCTACCTTACATCACATGTAATTGCCTCTCTAAGCGGAGTAACAAGATGAAGAAGACTTTGTATGTTTGATAAACTTAGACTCAAATGGAAGATTTCTATTTGTGATCTTTGAGAAATTATTCTACTTTCTGACTCTCACTCTTCCAAAATTAGAAGGTACATTCAGCATACGCAGAAGGAACATGGACTGAAGGAAGTCATACAGTGTCTCGCCCTTTTCTTCTCTTTGCTTGTCTCTTGTCTGTTCTAAGCATAGACCACTATTGGACAGTATCATGATTCTCCTTAGAATTCTTCTTTTTGTGGAGCTAGGGACTGAACTGAGGACATATACTAGCCTATGAAGAGTCTATTTTTATTCTGGTTAGATATTAGCTAAAATTGACATGCTCACTATGTAGAGATACTGTTTACATTTCACTTTAAAGTGACTCGGGATTTAATGGTATCTTGCTGAGGATATACTAATTCTGGGTAAAATTCGCTTATACCACTTCCTTGGTATTGAATAAGAACAGTGTTCTTCACCAGGAAGTCCTTAAATGAAAGAGAAAAAGGAGCCAGTGCCTTGAGTTACAGACACATGCGATGTATCCTTCCTGTCCGCAG
Seq C2 exon
CACTTCCCCAGAGAAGCAGGAATCTGTGCAGTTAGCAGTGAGGACGGCAGAAAAGCTCCTTAAAGAACTAAAACCTCAGACTGTCCAGGGCCGCCTGCAACTCCGCATCATGGAAAACTGCTGCTTAATGGCCACCAAGCAGAAGTCCAGTGTGGAGCAGGCGCTGAACACCTTCACCGAAATAGCAGCCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868:ENSRNOT00000007832:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.164 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]