RnoINT0157555 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128654174-128654664:+
Coord C1 exon
chr8:128654174-128654335
Coord A exon
chr8:128654336-128654471
Coord C2 exon
chr8:128654472-128654664
Length
136 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
CATGAGTCCTGTGCCCACAGCTC
3' ss Score
6.69
Exon sequences
Seq C1 exon
GCACATTGGACAGCCCAATGAAGCCTTGAGGTTTCTGAACAAAGCCCGAAAGGACAGCACTTGGGGCCAGCTTGCCACCTGTTACATGGTACAGATCTGTCTGAACCCTGACAACGAGATTGTCGGTGGAGAGGCTTTTGAGAGTCTGGTGGGTGACAGCAA
Seq A exon
GTAAGAGGACTAGGAGGCGGGATGAGGGGGCGGGGCGGGGGGCGGGGCGAAGAGGCGGGATGAGGCTTCAGTTTCTGGGCGGAGGCCAGGTGAGTGACCCACAAGCAGGCTGTCAGCATGAGTCCTGTGCCCACAG
Seq C2 exon
CTCTGCCAGTAGGAAAGAGTCTCAGCAGCACGGGGTGCGCACTGCAGAGAAGCTACTTCGGGAATTTTACCCACACTCGGAGTCCGGGCAGACCCAGCTGCGGCTGCTGCAGAGCCTCTGCCTGCTAGCCACCAGGGAGAAGGCGAACATAGAGGTGGCTCTGGGGGCCTTCATCGAGATGGCCCAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF145591=TPR_19=PU(59.5=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGCCACCTGTTACATGG
R:
GCCACCTCTATGTTCGCCTTC
Band lengths:
253-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]