BtaALTA0031936-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50998123-50998499:+
Coord C1 exon
chr22:50998123-50998215
Coord A exon
NA
Coord C2 exon
chr22:50998308-50998499
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
AGATCTCTTGTCCTTGGCAGACC
3' ss Score
7.09
Exon sequences
Seq C1 exon
GACAATGACAGCAACTTCCACGTGGATTTTGTGGTGGCAGCGGCCAGCCTGAGAGCTCAGAACTATGGGATCCCAGTGGCCAGCCACGCTGAG
Seq A exon
NA
Seq C2 exon
ACCAAGCGAATTGTGGGCCGGATTATCCCAGCCGTTGTCACCACTACAGCGGCCGTGGCTGGCCTGGTGGGCCTGGAGCTGTACAAGGTGGTGGGTGGACCACGGCCCCGCCATGCCTTTCGCCACAGCTATCTGCACCTGGCTGAAAACTACTTTAGCCGCTGGGTACCTAAGGCCCCAGACATCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335-26-29,26-28-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
NA
C2:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(19.7=37.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCAACTTCCACGTGGAT
R:
ATAATCCGGCCCACAATTCGC
Band lengths:
113-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development