MmuALTA0019246-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107981204-107981581:+
Coord C1 exon
chr9:107981204-107981296
Coord A exon
chr9:107981390-107981517
Coord C2 exon
chr9:107981518-107981581
Length
128 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACT
5' ss Score
5.86
3' ss Seq
AAATGCCCTGTCCTTGACAGATC
3' ss Score
8.67
Exon sequences
Seq C1 exon
GATGATGACAGCAACTTCCATGTGGACTTTGTGGTAGCAGCGACAGACCTGCGATGTCAGAACTACGGGATCCTACCAGTTAATCATGCTCGG
Seq A exon
ATCAAGCAAATCGTGGGCCGGATTATCCCAGCCATTGCCACCAGTACAGCAGTTGTGGCAGGCTTACTGGGCCTGGAGCTGTATAAGGTGGTAAGCGGGCTCCGATCCCATGGTACCTTTCGTCACAG
Seq C2 exon
CTATCTGCACCTGGCTGAAAACCACTTCATCCGCTCAGCGCCTTCTGCCCCAGCCGTCCAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-32-50,32-49,32-48-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
NA
C2:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.8=37.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGCAACTTCCATGTGGAC
R:
GACGGCTGGGGCAGAAGG
Band lengths:
146-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types