BtaALTA0031938-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50992126-50992536:+
Coord C1 exon
chr22:50992126-50992294
Coord A exon
NA
Coord C2 exon
chr22:50992415-50992536
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTTTAGTTTCTGCTCTCAGAGC
3' ss Score
7.6
Exon sequences
Seq C1 exon
GTATGTGCTGGGCTTGCCCGCCATGCAGAGAATTCAGGGAGCCAAGGTGCTGCTGTCTGGCCTGCAGGGCCTGGGGGCTGAGGTGGCCAAAAACTTGGTCCTGATGGGCGTGGGCAGCCTCACTCTCCATGATCCCCACCCTACTTGCTGGTCTGACCTGGCTGCCCAG
Seq A exon
NA
Seq C2 exon
AGCAGGACTTGGGAAGGAGCAGAGCTGAGGCCTCTCAAAAACTTCTGGCTGAGCTCAATGGAGCCGTTCAGGTGTCCGTCTACACAGGCGACATCACCAAGGACCTGCTGCTGGATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335-5-2,5-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(33.3=77.2)
A:
NA
C2:
PF0089916=ThiF=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTTGGTCCTGATGGGCG
R:
CTCTGCTCCTTCCCAAGTCCT
Band lengths:
104-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development