MmuALTA0019245-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107878128-107878520:+
Coord C1 exon
chr9:107878128-107878296
Coord A exon
NA
Coord C2 exon
chr9:107878399-107878520
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCCTTAGTGTTTCCTTTCAGAAG
3' ss Score
8.5
Exon sequences
Seq C1 exon
GTATGTACTGGGCCTGCCTGCTATGCAGAGGATCCAGGAAGCCAAAGTCTTGCTATGTGGCCTGCAGGGTCTGGGAGCTGAGGTGGCCAAGAACCTAGTCCTTACAGGTGTGGGCAGCCTCACCCTGCATGATCCCCATCCCACCTGCTGGGCTGACTTGGCTGCTCAG
Seq A exon
NA
Seq C2 exon
AAGAGAGCTTGGGAAGGAACAGGGCTGAGGCCTCTCAGGCGCAATTGGCTCAGCTCAATGAAGCTGTCCAGATCTCCGTCCACAGTGGCGACATCACTGAGGACCTACTGCAGGGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(33.3=77.2)
A:
NA
C2:
PF0089916=ThiF=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCCTTACAGGTGTGGGCA
R:
CCTGTTCCTTCCCAAGCTCTC
Band lengths:
97-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: