MmuALTA0019245-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107878128-107878520:+
Coord C1 exon
chr9:107878128-107878296
Coord A exon
chr9:107878386-107878398
Coord C2 exon
chr9:107878399-107878520
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTGCACTGAGCTGTCCTTAGTGT
3' ss Score
1.47
Exon sequences
Seq C1 exon
GTATGTACTGGGCCTGCCTGCTATGCAGAGGATCCAGGAAGCCAAAGTCTTGCTATGTGGCCTGCAGGGTCTGGGAGCTGAGGTGGCCAAGAACCTAGTCCTTACAGGTGTGGGCAGCCTCACCCTGCATGATCCCCATCCCACCTGCTGGGCTGACTTGGCTGCTCAG
Seq A exon
TGTTTCCTTTCAG
Seq C2 exon
AAGAGAGCTTGGGAAGGAACAGGGCTGAGGCCTCTCAGGCGCAATTGGCTCAGCTCAATGAAGCTGTCCAGATCTCCGTCCACAGTGGCGACATCACTGAGGACCTACTGCAGGGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(33.3=77.2)
A:
NA
C2:
PF0089916=ThiF=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCCTTACAGGTGTGGGCA
R:
CCTGTTCCTTCCCAAGCTCTC
Band lengths:
97-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: