BtaALTA0032690-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004511 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr11:104649625-104651758:-
Coord C1 exon
chr11:104651635-104651758
Coord A exon
NA
Coord C2 exon
chr11:104649625-104649779
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
CCGCCCATCTCCCCCAGCAGTGT
3' ss Score
5.03
Exon sequences
Seq C1 exon
GAGCTGGTGGAGTACTACCAGTACCACTCGCTCAAGGAGAGCTTCAAGCAGCTGGACACCACACTCAAGTACCCGTACAAGGCCTGGGAACGCACAGCCTCCAGGGCCTCCAGCCGCTCCCCAG
Seq A exon
NA
Seq C2 exon
TGTTCACACCCCGTGTCATCGGCACGGCCGTGGCCAGGTACAACTTCGCCGCCCGCGACCTGCGGGAGCTCTCGCTGCGGGAAGGTGACGTGGTGAAGATATACAGCCGCATCGGCGGGGACCAGGGCTGGTGGAAGGGCGAGACCAGCGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004511-30-30,30-29-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NA
C2:
PF0765312=SH3_2=PU(76.4=79.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTACCCGTACAAGGCCT
R:
GAAGTTGTACCTGGCCACGG
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development