BtaEX0039578 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004511 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12658]
Coordinates
chr11:104649625-104651758:-
Coord C1 exon
chr11:104651635-104651758
Coord A exon
chr11:104650713-104650799
Coord C2 exon
chr11:104649625-104649779
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCGCCTCTTTGCAGCTT
3' ss Score
10.46
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
GAGCTGGTGGAGTACTACCAGTACCACTCGCTCAAGGAGAGCTTCAAGCAGCTGGACACCACACTCAAGTACCCGTACAAGGCCTGGGAACGCACAGCCTCCAGGGCCTCCAGCCGCTCCCCAG
Seq A exon
CTTCCTGCGCTTCCTACAACTTTTCTTTTCTCAGTCCTCAGGGCCTCGGCCTTGCTTCTCAGGGCTCCTCCACACCCTTCTGGTCAG
Seq C2 exon
TGTTCACACCCCGTGTCATCGGCACGGCCGTGGCCAGGTACAACTTCGCCGCCCGCGACCTGCGGGAGCTCTCGCTGCGGGAAGGTGACGTGGTGAAGATATACAGCCGCATCGGCGGGGACCAGGGCTGGTGGAAGGGCGAGACCAGCGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004511_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NO
C2:
PF0765312=SH3_2=PU(76.4=79.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGACACCACACTCAAG
R:
TCTTCACCACGTCACCTTCCC
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development