RnoEX0097873 @ rn6
Exon Skipping
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5815888-5817581:-
Coord C1 exon
chr3:5817458-5817581
Coord A exon
chr3:5816759-5816845
Coord C2 exon
chr3:5815888-5816042
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTGCCTCTTTGCAGCTT
3' ss Score
11.06
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GAGCTGGTGGAGTACTACCAGTGCCACTCACTTAAGGAGAGCTTCAAGCAGTTAGACACTACACTCAAGTTCCCCTACAAGTCTCGGGAGCGCGCCGCCACCAGGGCCTCAAGCCGATCTCCAG
Seq A exon
CTTCGTGTGCTTCCTACAGCTTTTCTTTTCTCAGTCCTCAGGGCCTCAGCTTTGCCCCCCAGGGCCCCTCTGCTCCCTTCTGGTCAG
Seq C2 exon
TGTTCACACCGCGGGTCATCGGCACAGCCGTGGCCAGGTACAACTTTGCTGCACGAGACATGCGGGAGCTGTCGCTGCGGGAAGGTGATGTGGTGAAGATCTACAGCCGGATCGGTGGGGACCAGGGCTGGTGGAAGGGCGAGACGAACGGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422-'40-44,'40-42,42-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NO
C2:
PF0765312=SH3_2=PU(76.4=80.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGTACTACCAGTGCCA
R:
TGTCTCGTGCAGCAAAGTTGT
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]