DreEX0084171 @ danRer10
Exon Skipping
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:17990090-17993028:-
Coord C1 exon
chr21:17992905-17993028
Coord A exon
chr21:17990517-17990603
Coord C2 exon
chr21:17990090-17990244
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCCTGTCTCAGCAG
3' ss Score
8.11
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAGCTTGTGGAGTATTATCAGAGTCATTCACTGAAGGAGAGTTTTAAGCTGTTGGACACAACATTACGGTACCCTTACAAATCCCGGGAACGCTCAAGCTCTCGCACCAATACCCGCTCACCAG
Seq A exon
CAGCCACCTGTGCTTCCTACAACTTCTCCTTCCTTAGTCCTCAGGGCCTCAATTTCTCCTCTCAAAGCTCTGCTCCCTTCTGGTCAG
Seq C2 exon
TATTCACACCCAGGGTAGTCAGCACAGCTGTGGCGCGATACAACTTTGCTGCCCGAGACATGCGAGAGCTGTCACTGCGAGAAGGAGACATCGTCAAGATCTACAGCAAGATTGGGGGAGACCAAGGCTGGTGGAAAGGAGAAGCCAACGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NO
C2:
PF0765312=SH3_2=PU(76.4=80.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGCTCTCGCACCAATA
R:
CGTTGGCTTCTCCTTTCCACC
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]