DreALTA0031786-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:17990517-17993028:-
Coord C1 exon
chr21:17992905-17993028
Coord A exon
NA
Coord C2 exon
chr21:17990517-17990600
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TCTCTCTCCTGTCTCAGCAGCCA
3' ss Score
7.45
Exon sequences
Seq C1 exon
GAGCTTGTGGAGTATTATCAGAGTCATTCACTGAAGGAGAGTTTTAAGCTGTTGGACACAACATTACGGTACCCTTACAAATCCCGGGAACGCTCAAGCTCTCGCACCAATACCCGCTCACCAG
Seq A exon
NA
Seq C2 exon
CCACCTGTGCTTCCTACAACTTCTCCTTCCTTAGTCCTCAGGGCCTCAATTTCTCCTCTCAAAGCTCTGCTCCCTTCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718-29-34,29-33-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGCTCTCGCACCAATA
R:
GGGAGCAGAGCTTTGAGAGGA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]