DreALTA0031786-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000044718 | vav2
Description
vav 2 guanine nucleotide exchange factor [Source:ZFIN;Acc:ZDB-GENE-091204-420]
Coordinates
chr21:17990517-17993028:-
Coord C1 exon
chr21:17992905-17993028
Coord A exon
chr21:17990601-17990603
Coord C2 exon
chr21:17990517-17990600
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CTCTCTCTCTCCTGTCTCAGCAG
3' ss Score
8.11
Exon sequences
Seq C1 exon
GAGCTTGTGGAGTATTATCAGAGTCATTCACTGAAGGAGAGTTTTAAGCTGTTGGACACAACATTACGGTACCCTTACAAATCCCGGGAACGCTCAAGCTCTCGCACCAATACCCGCTCACCAG
Seq A exon
CAG
Seq C2 exon
CCACCTGTGCTTCCTACAACTTCTCCTTCCTTAGTCCTCAGGGCCTCAATTTCTCCTCTCAAAGCTCTGCTCCCTTCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044718-29-34,29-33-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGCTCTCGCACCAATA
R:
GGGAGCAGAGCTTTGAGAGGA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]