MmuALTA1003484-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27268151-27269022:-
Coord C1 exon
chr2:27268899-27269022
Coord A exon
chr2:27268204-27268237
Coord C2 exon
chr2:27268151-27268203
Length
34 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCTCTCTTGCCTCTTTGCAGCTT
3' ss Score
11.06
Exon sequences
Seq C1 exon
GAGCTGGTGGAGTACTACCAGTGTCACTCACTCAAGGAAAGCTTCAAGCAGTTGGACACTACACTCAAGTTCCCCTACAAGTCTCGGGAGCGAACCACCAGCAGGGCCTCAAGCCGGTCTCCAG
Seq A exon
CTTCCTGCGCTTCCTACAACTTTTCTTTTCTCAG
Seq C2 exon
TCCTCAGGGCCTCAGCTTTGCCCCCCAGGCCCCTTCTGCTCCCTTCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621-68-51,68-50-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACTACACTCAAGTTCCCC
R:
TGACCAGAAGGGAGCAGAAGG
Band lengths:
123-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types