MmuEX0051283 @ mm10
Exon Skipping
Gene
ENSMUSG00000009621 | Vav2
Description
vav 2 oncogene [Source:MGI Symbol;Acc:MGI:102718]
Coordinates
chr2:27267230-27269022:-
Coord C1 exon
chr2:27268899-27269022
Coord A exon
chr2:27268151-27268237
Coord C2 exon
chr2:27267230-27267384
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTGCCTCTTTGCAGCTT
3' ss Score
11.06
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GAGCTGGTGGAGTACTACCAGTGTCACTCACTCAAGGAAAGCTTCAAGCAGTTGGACACTACACTCAAGTTCCCCTACAAGTCTCGGGAGCGAACCACCAGCAGGGCCTCAAGCCGGTCTCCAG
Seq A exon
CTTCCTGCGCTTCCTACAACTTTTCTTTTCTCAGTCCTCAGGGCCTCAGCTTTGCCCCCCAGGCCCCTTCTGCTCCCTTCTGGTCAG
Seq C2 exon
TGTTCACACCGCGGGTCATCGGCACAGCCGTGGCCAGGTACAACTTTGCTGCTCGAGACATGCGGGAGCTGTCACTGCGAGAAGGTGATGTGGTGAAGATCTACAGCCGAATTGGTGGGGACCAGGGCTGGTGGAAAGGAGAGACAAATGGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009621_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.000 C2=0.023
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(6.7=11.9)
A:
NO
C2:
PF0765312=SH3_2=PU(76.4=80.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCCCTACAAGTCTCGGG
R:
CCCACCAATTCGGCTGTAGAT
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types