BtaALTA0033207-2/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004184 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:37167345-37169882:+
Coord C1 exon
chr2:37167345-37167410
Coord A exon
chr2:37169681-37169707
Coord C2 exon
chr2:37169708-37169882
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
CTGCTGTTTCTCCCCTTCAGGAC
3' ss Score
12.71
Exon sequences
Seq C1 exon
GGCGTTTTGGGTCTTCGACGTGAAAGGACCAGTGCCCAAGGGCCAGTTTAGCAGCAGCGGTGGCAG
Seq A exon
GACATATTTTGGCTTCATGTTCAACAG
Seq C2 exon
ATGGTACCACTGTCCTATGGGATACTCAAAACGGGCAGATTTTGGCAGTGATGGAACAGCCCAGTGGTAGCCCTGTGAGAGTTTGCCGATTTTCCCCAGACTCCACTTGTTTGGTGTCAGGGGCATCTGATGGAACTGTTGTTTTGTGGAATGCACAGTCATACAAGTTACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004184-2-4,2-3,2-2,2-1-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=27.1),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTCGACGTGAAAGGACC
R:
TACCACTGGGCTGTTCCATCA
Band lengths:
126-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development