GgaALTA0006605-2/7 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000012574 | WDSUB1
Description
WD repeat, SAM and U-box domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001026434]
Coordinates
chr7:36046498-36048056:-
Coord C1 exon
chr7:36047940-36048056
Coord A exon
chr7:36046673-36046699
Coord C2 exon
chr7:36046498-36046672
Length
27 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CTGCTGCTTCTCTCCATCAGGAC
3' ss Score
9.99
Exon sequences
Seq C1 exon
AATTTGGAGATTGCTAAGGAAATAACTTGCCCTGTTCTCCATCTGACCGTGTCTGACAGTTTGGCACCTAACCAGATCGTTCCAGGAAGATAAAGTAGCTGACCTGTGGTGGTGCAG
Seq A exon
GACACACTTTAGCTTCGTGTTCAACAG
Seq C2 exon
ACGGTGCTACCATCATTTGGGACACTAGCGATGGTCGGATGCTGGCAGTGCTGGAGCAGCCCACTGGCAGTCCTGTCAGAGTCTGCCGCTTTTCTCCCGAGTCCACTTACCTGGTGTCAGGTGCAGCTGATGGAAGTGTCGTTCTTTGGAACGTGCACTCAATGAAATTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574-7-10,7-9,7-8,7-7,7-6,7-5,7-4-2/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTAGCTGACCTGTGGTGGT
R:
AAAAGCGGCAGACTCTGACAG
Band lengths:
118-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]