BtaALTA0033673-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004974 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:HGNC:28654]
Coordinates
chr1:59069613-59072054:+
Coord C1 exon
chr1:59069613-59070323
Coord A exon
chr1:59071896-59071999
Coord C2 exon
chr1:59072000-59072054
Length
104 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
GCTGTTTTGAGGATAAATAGCTG
3' ss Score
-4.93
Exon sequences
Seq C1 exon
CTGTGGTACTACTACCTCACTCACAGAAGGAAAGAACAGACTCTGTTTTTCCTGAGCCTCGGACTGTTCTCTCTGGGCTACATGTACTATGTGTTCCTGCAGGAAGTGGTCCCCAAGGGGCGTGTGGGGCCCACTCGGCTGGCTCTTCTTACCTGCGGGTTATTGCTCATCCTCTTCGCCTTGTACAGAGCCAAGAAGAATCCAGGCTACCTCAGAAACCCAGCACACAATGACAGGGCTCTAAGTGGCAGCCAGGTCGAATGCCTGAACAGAAAAGGGCCTGAGAAGCCCAAGGGGTTCCCCAGCGCAGATCTGTCTGGCGGTCTCAACAACCGCGCACCCAAGGATGAGACTAAGGACTCCCCGAGGACGTCGGCCGGAAGCCCGGCCAAAGGGAAGGATGACTGGTGCGCCAAGTGCCAGCTGGTGCGGCCAGCCCGGGCGTGGCACTGCCGGATCTGCGGCATCTGTGTGAGGAGGATGGATCACCACTGTGTCTG
Seq A exon
CTGTGTCGGAGAATCAAACCATCAAGCATTTATACTTGCCCTTTTGGTCTTCCTGCTCACCTCGGTGTATGGGATAACGCTGACCTTGGACACCATCTGTACAG
Seq C2 exon
ACAGAAGTGTCTTCACAGCTCTCTTCTATTGCCCTGGAGTTTATGCAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004974-4-12,4-11,4-10-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(52.1=46.2)
A:
NA
C2:
PF0152915=zf-DHHC=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTGTCTGGCGGTCTCAA
R:
ATTTGCATAAACTCCAGGGCA
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development