MmuALTA0020460-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000036304 | Zdhhc23
Description
zinc finger, DHHC domain containing 23 [Source:MGI Symbol;Acc:MGI:2685625]
Coordinates
chr16:43971399-43974166:-
Coord C1 exon
chr16:43973468-43974166
Coord A exon
chr16:43971456-43971557
Coord C2 exon
chr16:43971399-43971455
Length
102 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
GCTGTTTTGAGGATAAATAGCTG
3' ss Score
-4.93
Exon sequences
Seq C1 exon
CCCATGCTGGCACTCTGGTATTACTACCTCACTCACAGAAGGAAAGAACAGACGCTGTTTTTCCTGAGCCTCGGGCTGTTCTCACTGGGCTACATGTACTATGTGTTCCTGCGGGAAGTGGTCCCCCAAGGGCGCGTGGGGCCCACTCAGCTGGCCCTCCTAACCTGCGGGTTACTTCTGATACTCTTAGCCTTGTACCGAGCCAAGAAGAATCCAGGCTACCTCAGCAATGACAAATCCCCAAGCAACAGCCAAATTGAATGCCCGGTCAAAAAAGGGCAGGAGAAGACCAAAGGGTTCCCCGGCACAGACGCCTCGGGGAGCCTCAACAACCGCACACTGAAGGACGATGTTAGGGGTTCCTCCAGGGTGGGGCTTGACAGCCCTGCCAAAGTGAAGGAAGACTGGTGTGCCAAGTGCCAGCTAGTACGACCCGCCCGGGCATGGCATTGCCGGATATGCGGTATCTGTGTACGGAGAATGGACCATCATTGTGTCTG
Seq A exon
CTGCGTCGGAGAATCAAACCATCAAGCATTTATACTTGCCCTTTCCATCTTCTTGCTCACTTCGGTTTACGGAATATCGCTGACCTTGAACACCATTTGTAG
Seq C2 exon
GGATAGAAGCCTCTTCACAGCCCTCTTCTACTGTCCTGGAGTTTACGCTAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036304-4-9,4-8,4-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(52.0=45.3)
A:
NA
C2:
PF0152915=zf-DHHC=FE(26.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAGGAGAAGACCAAAGG
R:
AAGAGGGCTGTGAAGAGGCTT
Band lengths:
252-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types