HsaALTA1050712-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger DHHC-type containing 23 [Source:HGNC Symbol;Acc:HGNC:28654]
Coordinates
chr3:113953700-113956506:+
Coord C1 exon
chr3:113953700-113954410
Coord A exon
chr3:113956348-113956449
Coord C2 exon
chr3:113956450-113956506
Length
102 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
GCTGTTTTGAGGATAAATAGCTG
3' ss Score
-4.93
Exon sequences
Seq C1 exon
CTGTGGTACTACTACCTCACTCACAGAAGGAAAGAACAGACCCTGTTTTTCCTGAGCCTTGGACTGTTCTCTCTGGGCTACATGTACTATGTGTTCCTGCAGGAAGTGGTCCCCAAAGGGCGTGTGGGTCCCGTTCAGCTGGCGGTTCTTACCTGCGGGTTATTTCTGATACTCTTAGCCTTGCACAGAGCCAAGAAGAATCCAGGCTACCTCAGCAATCCAGCAAGCGGTGACAGATCTCTAAGCAGCAGCCAGCTGGAGTGCCTGAGCAGAAAAGGGCAGGAGAAGACCAAAGGGTTCCCTGGGGCAGACATGTCGGGCAGTCTCAACAATCGCACAACAAAGGATGACCCCAAGGGCTCTTCCAAGATGCCAGCTGGAAGCCCCACCAAAGCGAAGGAGGACTGGTGTGCCAAGTGCCAGCTGGTGCGACCAGCCCGGGCATGGCACTGCCGGATATGTGGCATCTGTGTGAGGAGAATGGATCATCATTGTGTCTG
Seq A exon
CTGCGTTGGAGAATCAAATCATCAAGCATTTATACTTGCCCTTTTGATCTTCTTGCTCACCTCGGTGTATGGGATCACACTGACCTTGGACACCATTTGTAG
Seq C2 exon
AGACAGAAGTGTCTTCACAGCTCTTTTCTATTGTCCTGGAGTTTATGCAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307-6-10,6-9,6-8-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(52.1=46.2)
A:
NA
C2:
PF0152915=zf-DHHC=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCAGAAAAGGGCAGGAG
R:
AGCTGTGAAGACACTTCTGTC
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains