BtaALTA0033691-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000020053 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr13:34095838-34115099:-
Coord C1 exon
chr13:34114899-34115099
Coord A exon
chr13:34095898-34095900
Coord C2 exon
chr13:34095838-34095897
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTTTGTTCTTTGATTTTTAGCAG
3' ss Score
7.44
Exon sequences
Seq C1 exon
TTACAAATTATAATACTGTGGTAGAAACAAACTCAGATTCAGACGATGAAGACAAACTCCACATTGTGGAAGAAGAAAGCATCACAGATGCAGCCGACTGTGAAGGCGGCGTGCCAGACGATGACCTGCCCTCAGACCAGACAGTGTTGCCCGGGAGCAGCGCAAGAGAAGGGAGCGCAAAGAGCTGCTGGGAGGACGATG
Seq A exon
CAG
Seq C2 exon
GAAAGGAAGGACAAGAAATCCTGGGGCCGGAAGCTCGGGCAGATGAAGTGGGATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020053-11-12,11-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGAAGGGAGCGCAAAGA
R:
CACATCCCACTTCATCTGCCC
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development