GgaALTA0003782-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007260 | F1NB51_CHICK
Description
NA
Coordinates
chr2:14312732-14316286:-
Coord C1 exon
chr2:14316086-14316286
Coord A exon
chr2:14312792-14312794
Coord C2 exon
chr2:14312732-14312791
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
TCTGAAATGTAATATTTCAGCAG
3' ss Score
3.47
Exon sequences
Seq C1 exon
TCACCAATTACAATAACGTGATAGAAGCAAACTCAGATTCAGATGACGAAGATAAATTGCATATAGTGGAAGAAGAAAGTATAACTGATGCAGCAGACTGCGATGCAAGTGTGCCAGAAGATGACTTGCCAACAGACCACACCGTGTTACCAGAAAACAGTGAGAGGGAAGGGAGCACAAACAGCTGCTGGGAAGATGAAG
Seq A exon
CAG
Seq C2 exon
GAAAAGAAACAAAGGAAATCCTGGGGCCTGAAGCTCAGTCAGATGAAGTTGGATGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007260-5-4,5-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTGCCAACAGACCACAC
R:
GGCCCCAGGATTTCCTTTGTT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]