BtaALTA0033750-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21393117-21396785:+
Coord C1 exon
chr7:21393117-21393307
Coord A exon
chr7:21396611-21396613
Coord C2 exon
chr7:21396614-21396785
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
GGTCCGTGGGTTTGTCTCAGCAG
3' ss Score
2.35
Exon sequences
Seq C1 exon
CCCACAAGGCGGCCGGAGTCCAGCGACGACCGGCATGTCATGTGTAAGCATGCGGCCATCTACCCGACGGAAGAGGAGCTCCTGGCCGTCCAGAAGGCCGTCTCCCATGCGGAGCGTGCTCTCAAGCTGGTGTCTGACACGCTGGCTGAGGAGGACTCTGCCAGCCCGGAGCCCGAGGGCGGGGACCACAG
Seq A exon
CAG
Seq C2 exon
CCGCCCCAGCCCCTCAGCCCGGATCCTGAAAGGCGTGATGCGGGTCGGCCTCCTGGCGAAGGGGCTACTCCTGCGTGGAGACCGGGCGGTACAGCTGATCCTGCTCTGCTCCCAGAAGCCCACCCGCGCCCTGCAGCGCAGAGTCGCCGAGCAGCTGCCTCTCCAGCTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755-16-17,16-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.766 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF075289=DZF=PU(17.4=72.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCAAGCTGGTGTCTGAC
R:
CTTTCAGGATCCGGGCTGAGG
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development