BtaINT0164441 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000755 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:29189]
Coordinates
chr7:21393117-21396785:+
Coord C1 exon
chr7:21393117-21393307
Coord A exon
chr7:21393308-21396610
Coord C2 exon
chr7:21396611-21396785
Length
3303 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
GGTCCGTGGGTTTGTCTCAGCAG
3' ss Score
2.35
Exon sequences
Seq C1 exon
CCCACAAGGCGGCCGGAGTCCAGCGACGACCGGCATGTCATGTGTAAGCATGCGGCCATCTACCCGACGGAAGAGGAGCTCCTGGCCGTCCAGAAGGCCGTCTCCCATGCGGAGCGTGCTCTCAAGCTGGTGTCTGACACGCTGGCTGAGGAGGACTCTGCCAGCCCGGAGCCCGAGGGCGGGGACCACAG
Seq A exon
GTGATGGACGGCGGCCCCCTGTCCAGGGGCCCAGAGGTTGCTGATCCCTGGCTGGGTGGGCAGGGGTCAGGGTCCGGACAGGAAGTGGCAGCTCCAGTGCCAGGAGGCTTGAAGTCTTTGGGGCCTGCGCTTTCCAGCCCCCTTCAGATATCTCCCCAGGAGGCTAGGAGCTAGGAGCTAGCCAGGAGGCTGGGAGATCAAAGGGAGTTATAGTACCCCCAGCCAAGGAGAGTGAGTGTTCTCACACCGGAAGTCACTTTCCTGTAGAAGGTGTGTCTAGAAACGTGGTTTGCAGAGGATTAGCACCTCTGTGTCCTCACCTGTGACACAGAGACCAGTGCGAGAGGTGCCGCCAAGCACTAAGCATGTGTGTGAATCATCTTTCCAGCTGCCCGACTCTCAGAAGACGGAAAGTCCCGGCACCTCGTAGTGAATCATTGCACAGTTTAGAGAATCCCAGAGGACTTAGCTTTTCCAGGTCCCTCATCTCTGGGTGGCTTCCTTTTCATTTACCTTTTTTTTTTTTTTTCTGGTTGTGCCACATGGCTTGCAAAATCTTAGTTTCCCGACCAGGGATTGAACCTGGACCTTCAGCAGTGAGCACACACAGTTCTAACCACTGGACCTCCCTCGTTTACTATTTTAAGGTGTTTTTTTGATGGTAAAATACTCGTAACAGGAAATTGGCCATTGTGGGCACATTCACAAAGTTGTACAGCCATCACCGCTGTCTGTTTCCAGAACTTTTTAATCATCTGAAACAGAATTCCATACCATAAAATTCCCCAGCCTCCGGCACCCACCTTTCCATGCCCCATGTCCATGGCGTGGCCTGTTCTGGATGTTTCCTGTCCATGGAATCGTGCAGCATTTGTGTCAGGCTGATTCCAGTCAGTAGCTTCTTTGTGCCCGAGTGTTTGCTGTCTGAGAAGAAGAACATGAGAGCCATGCGTGAGTCACCAGGTGTCATAACCGAATGCACTCGTCCCTCATGTGAACACGGGCGCCGCCCGCTCCCCCCTCCAACTCCGGTGAGGAAGCTCACTGCCTGGAAGTGGAAGCAGGTGCGGCCCCAGACAGAGCAGCCTTCCCTCAACCTCCACCCCCATGTCTCCTGAAGGAGAAGGGCCCTCACTTAGTGCTTCGTGGCTTCCCTCCCCGTTTTCTCCCCATTCTCAGGTTTTGTTTTTGTTAGTTTAACTTTTCATTTTGAAATGATTATGGACTCAACACAAACACAGTAAGGAGAGGACCCTCCCCCCTCCCCCAGCTTCCACAGCGTGGACCCACAGGTGTCAAGGCTGGGCGTCCACACAGGCACCTCAGGGAGGCCCAGGCCCCGCTCAGGCCTCCCCAGTGCTGGACCGCTCGCCCCCTGAGTAGATGCCCCACCGCAGTGAGGACACGGGGCCCCCACCAGCACAGGAGCCCCACTGCCCCCACACTCCCACAACCCCTCAAACCCAGCTTGAAAGCAAAACCGATTGCACTTTTTTAAAGCCTTCACATAACATTGATGTCATGTTACATGTTCTGTCCTTACATTATTTTTCTTTCTTTGTTGTTGTTTGTTTATTTTTATTTTTTGTCTTTTTCATTTTTTTTACATTATTTTTCAAAAACATAGAAGTGTTGGTGGCTTTTTGTCCTCACAATTTTTTTTTCCCTTCGTTGCACTGAGCTTTGTGGGATGTTAGTTCCCTGACCAGGGATTGAACCCAGAGCCCTTGGTAGTGAGAGCGTGGAGTCCTAACCACTGGACTGCCAGGGAATTCCCTTTCTCACTCTTGTTTGTGGCCTTTTTTCTGTGGAAATGTGTGTGTGTGTTTAATAGGAACATGGTAAACTGTCCTATGGATGTTGCATTATTTACTTAACTGTCGCAAAGAGCTCATTAGTGTTGGTTTTTCTTTTTCACTTTTATTATGGAAATTCTCTAACACACACAAAAGATGACCATACCTAAACCGAGGGTGGCTCACTTGCTTTCTCCCCATCTCCCGCCTTGCCCACAGTGGTTAAAGGAAATCCTGACACCTTACTGAGCGCCAGCCCACAGCTGGAGTATGTCAGTGCATCAGAGCCCATCTCTAAACAATACTTTTTCATTTAACAAAACCAGAATGCCATGATCATCCTCAAAGAAAAATGAACAATAATTCTTTAGCAACACCAAATATCCAGTCAGTGCTGCAGCGTCCAGTTGTCCCATAGATAACAATAATTCAGCCTTTTAGGAGGTTTTTTTGTTTTGCAGTTCGTGTTGAATCAGGGTCCCAATTAATTGACAAGTTGTAAGTCTCTTGATCCACGGGTTCCCACCTTTGTGCTCTGCCTTCCCCCAAAGGGTCTGCTCCTTGTCCTGTAGACATTCCAGGCATGGCTGGGTCCCCCTGGACCATCCCAGGCTCCAGCACTGGTGGTCTGGAGACAGATCACAACGACACCCACATGTATCGTAGAATAAGGTTATCGCATGTCCTGAGACACGACGCAAAGCAAAGTGGTAGTCAGGAAGTGGTCGGAGCGGATGGCAGCTTCTGAGGAGGTGACCGTGTGTGTGTGTGTGTGTGTGAGAGAGAGACAGCGTGGAGAGGTCCACCATGGCGTGGGGGCACCCCAGGCAACGGTCCGGGTGGGCGAGCCTCGTGGGGAGGGAGTGGAAGGACAGGGTGGTGGTGCAGCAGCCAGGGGTCAGGGTGGGTGCCCCAGGAAGAAGCTGGGGTGTCCCCAGCCTACAGCGGGGCAGCAGTAGGAGGGTGACTGCCAGGCCAGTGCTGCCATGGGGGTCACCTGCAGAAAGTGGCCAGGACAGTGGTGGGCGGGCGAGGGCAGACTTGGGGGCAGGGGAGGTGGGACTAGATGCGCAGGCTGGAGGGGAGGACAGGCAGGGAGCTGCCGGCCAGGCCTCCTGAAAGGAGTCCAGGTGGGGGTGACGTGGCCACAGAGACAGCTCAGAAGCCGGGGGCCAATGAGGCTGCCTGGGGTCAAGCAACCGTCCCCTCCCCCCGCTCCCCCCGCCCCCCCTCCTCCCCTCCGGCATGAAGTTTACCAGCAGAGGGTGCCAGCTGCCAGCCCCGCCGAGCAGCATAGATTCTCATCCTCAGGTCCGAGAACTCTCCCTGTTCTCCCAGTTCTCCCGGTGTCTCTCGGATCAGGTGCCCTCTGGGAAGGGCCATGCTCCCACTTCACAGATGAAGACATGGAGGCGCAGGCGCCTGGCAAGGAAACCCATGCCTCTGGGTCGGGAGTGGGGGTCCTTCCTCCGTGCCCCCTGCTCACTGGTCCGTGGGTTTGTCTCAG
Seq C2 exon
CAGCCGCCCCAGCCCCTCAGCCCGGATCCTGAAAGGCGTGATGCGGGTCGGCCTCCTGGCGAAGGGGCTACTCCTGCGTGGAGACCGGGCGGTACAGCTGATCCTGCTCTGCTCCCAGAAGCCCACCCGCGCCCTGCAGCGCAGAGTCGCCGAGCAGCTGCCTCTCCAGCTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000755:ENSBTAT00000001004:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.766 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF075289=DZF=PU(17.4=72.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]