MmuINT0180105 @ mm10
Intron Retention
Gene
ENSMUSG00000034949 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:MGI Symbol;Acc:MGI:2143792]
Coordinates
chr10:81246590-81247393:+
Coord C1 exon
chr10:81246590-81246756
Coord A exon
chr10:81246757-81247218
Coord C2 exon
chr10:81247219-81247393
Length
462 bp
Sequences
Splice sites
5' ss Seq
CGGGTTAGT
5' ss Score
4.94
3' ss Seq
CTGCCTCTTTGTCTCCGTAGCAC
3' ss Score
10.52
Exon sequences
Seq C1 exon
TCAGGGCGTCGGCCGGAGAGCAGCGACGACCGTCATGTCATGTGTAAGCATGCCTCCATCTACCCCACGGAAGAAGAGCTGCAGGCCATCCAGACAGCTGTGTCCCACACAGAACGAGCACTCAGACTGGTGTCAGACACCCTGGCGGAAGAGAGCAGCCAGCACGG
Seq A exon
GTTAGTGCCTCAGGGCTCTGTCCTACTGGTTTGTCTCAAATTCCTCTGCCAGACTTGTGACAAAGTCCCTCTTACCCTATTTCCCTGTGTGTTGGGTTTGGTAATCCCAGTACTCAGGAAGCTGAAACAGGAGGATCACTGTGAGGGAGGTTAACCTGGGCTGGACAGTAAGCCCTTGCTTCAGATATAGAGATGATACACAGGTAAATAGATAGATAGATAGACAGACAGACAGAGAGATAGGTCAACCACACATAAATAGCTGGATAGACTGTAAGTAGGTGTCTGGCCTCTCAAGGATCAGGTTGCTTGTGTGGGCTGCAGGATGGGTATGGGGGTGGCAGCAGTGTGTTTCATTTCCCATCTGTGTCCCCTGTAGAGGGGCCAGGTCCCTGGAACTCAGGACCTGGGAGCCTATGCTGTCCCTCCCTCCTGACACATTCTGCCTCTTTGTCTCCGTAG
Seq C2 exon
CACCCTGGCGTCCCCACCACCGAGGATGCTGAAGGGTGTGGTGCGGGTTGGCATTCTGGCCAAGGGCCTTGTCCTCCGTGGGGACCACAGTGTACAGCTGACCCTGCTCTGCTCCAAGAAGCCCACGCACTCCCTGCTGCAGAGGATCAAGCAGGAGCTGCCCCGAGAGCTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034949:ENSMUST00000117798:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF075289=DZF=PU(17.4=72.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGCGACGACCGTC
R:
AGACAGCTCTCGGGGCAG
Band lengths:
326-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types