HsaINT0185612 @ hg19
Intron Retention
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3816672-3819233:-
Coord C1 exon
chr19:3819043-3819233
Coord A exon
chr19:3816844-3819042
Coord C2 exon
chr19:3816672-3816843
Length
2199 bp
Sequences
Splice sites
5' ss Seq
CAGGTCATT
5' ss Score
4.45
3' ss Seq
CTGTGGCTTTGTCCCCACAGCAG
3' ss Score
9.72
Exon sequences
Seq C1 exon
CCCGGGCGGCGGCCGGCGTCCAGCGACGACCGGCACGTCATGTGCAAGCACGCCACCATCTACCCCACGGAGCAGGAGCTCCTGGCCGTGCAGAGGGCCGTGTCCCACGCAGAGCGGGCCCTCAAGCTGGTGTCCGACACACTGGCCGAGGAGGACCGGGGCCGCCGAGAGGAAGAGGGTGACAAGCGCAG
Seq A exon
GTCATTGGAGATCCCCTTCCCCAGGGCCCGGCTCTCAGCCAGGACAGAGGTCAGCTCCTCGGGACGAGACCCTGCAGGAACCCCTAGCTCTGATGGGCCTGGAGCCGTCGGTGGCCCGCGGCAGCTTTCCAGCCCCAGGAGTAGGAAGTTCCCCAGGTCTCAGAGCTGGAGCTTCTCGGCACTGAACGAGGCTGGTTTGCAGCGGGTGATCCGTGCTGTTCTAATGCCTTAGCATTCCCTTTTGCTATTGAAGGCGCATCTAAAAATAGTTCACAAGGGACTGACAGTCTCTGTAAACCTCAGTTTCCTCATTGGCAAAAGGAAAAGCTGAGCGTGATTCTGACGGACTTCTCCGCCTTGGGGAGTGACTGAGTAATCAGAGTAGTTCATGTCACTGAGTGCCCGTGTGAATCAGCTCCCAACCCCTGTGATTCTTAGGAAGTGAGAAAGTCCCCACGTCGTCTAAGTAATTGCCATGGAGATAACTCATCTGAGCGGGAGTTACCTTTTTTCAAAGTCCTTTCCTGCTCTGGCAGCTGCTGTTTGTTGTTGTTGTTTTTTTGTTTGTTTTGTTTTTTAAGAAACAGATCTCACTCTGTTACCCAGGCTGGAGGGCAATGGCGCGATCAGAGCTCACTGACCCTCAGACCCCCGGGCTCAAGCTGTCCTCCCGCCTCAGCCTCCCGAGTAGCTGGGACTGCAGGCGCCCACCACCACACCCAGCTAATTGTTAACTCTTTGTAGCAGGGAGAGGTCTCGCTATGTTAGCCAGGCTGGTCTTGAACTCCCGGGCTCAAGCGATCCTCCCACCTCGGCCTCCCAAAGTGCCGGGATTACGGGTTCACTTTCCTCTTTGAATGCTTCTCTATTGTGGTAAAATCCACATCACACAACACTGAGCATTTTAACCTGTCTAAGTGCACAGTTCAGGGGCATGAAGCACGTTCACACGTGCAAACTACACCCCTGTCCATCTCCACAGCTGTCTCATCTTCCCAAACAGAAGCTCTGTCCCAATTAAGCAAACTCCTCTTTTTGTTTCGTGCACCCATGCGTGCCCGCCCTGTCTCTGTGGATTGGCCTGTGCTGGACAGTTCATAGAAATGGGGTCGCACACCGTGTGGCCTTTTGTGTCTGGCTGATCCACTTGGCCTGAGGGCTTCCTTTTGCTGGAGCACAGAGCTCCATATAGGAAATGTGAGCCTTGCACCTGTGGGTTGCAAAGTGTCCCAATACAAGGAGCGCCCAGGAAGCTGCCCTCTCCTTTTTTTTTTTTTTTTTTCTTTTTTGAGACTGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACAGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTTCCAAGTACTGGAACTACAGGAATGTACCACCACACCCAGCTAATTATTATTATTATTATTATTATTATTATTATTATTATTATCATTATTTTGAGATGGAGTCTTGCTCTGTCTCCCAAACTGGAGTTCAGTGACACAATCTCGGCTCACTGCAACCTCCATCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGCACCCGCCACCATGCCTGGCTAATTCTTATATTTTTATTAGAGATGGGTTTTCGCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGGCCTAGGTTTGTGAATTTTCTTAACCCCCGTGAAGCAAGAGCAGAAAGCAGCCTTGCTTTCTGTCCTCTCTGGAACCCATGTGGAGCCGAAACAACAGGGTGACAGAGTCCGTGAACGCGGGAGCCACCAGACCTCGCGGGGCGGGCCTGGGGCTTAGCGTTTGCTCACAAGGAAGGAAAATGTGGGTTTGGCCACGCGTCCCGGCTACTCCGAGGCATGCCCGGTGACAGCACCTCCGAGATCGATCTCACGGTGTCTCATTTCATCCCGCAAGCGCCTCCGACAGAGCGGCCTGGTCCCATTTCATGGATGAGGATGCCGAGGCACAGAGAGGCTCTGTAACTTGCAGGGTCCCCGTAGCTCAGGAGGGAGGCAGCTGGGGTACCCCGCGTCTCTCCGCTGATGGCGCACGTCTGTGGCTTTGTCCCCACAG
Seq C2 exon
CAGCGTTGCCCCCCAGACTCGGGTCCTGAAAGGCGTCATGCGAGTAGGCATCCTGGCGAAAGGCCTCCTCCTGCGTGGGGACAGGAACGTGCGCCTCGCTCTGCTCTGCTCCGAGAAGCCCACGCACAGCCTGCTGCGGAGGATCGCCCAGCAGCTGCCCCGGCAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-ZFR2:NM_015174:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF075289=DZF=PU(17.4=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)