DreINT0177947 @ danRer10
Intron Retention
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4684154-4687975:-
Coord C1 exon
chr22:4687782-4687975
Coord A exon
chr22:4684323-4687781
Coord C2 exon
chr22:4684154-4684322
Length
3459 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGA
5' ss Score
3.45
3' ss Seq
ATCTGTTTCCTCTTTTACAGGTC
3' ss Score
12.55
Exon sequences
Seq C1 exon
CCCGTGCGAAGGCCTGATTCACCCGATGACCGGCACATCATGGCCAAACACTCCGCCATCTACCCTGTGGAGGAGGAGCTGCAGGCGGTGCAGCGGATCGTCTCTCATTCTGAGCGCGCTCTCAAGCTGGTCTCTGATACACTGCTGGAGAAAGTGGCGTGTGCTGATGACGACGAAAGCGAGACTGACAAACA
Seq A exon
GTGAGAACTAATGCTGTCCAGATACTGCAACTACTGTAGAATAATATAAATATAATATTTGATACCTCGGGGAATAGCCCTTTGGTAAATTCTATTTATTTTTTGTGATATTTAACTGAAGACATATTTTACAGTATTTTACTATTATTATAAAACCAGTATATTGCTTTAATATTATATTTTGGAGAAAGTAGTTTCAATTTAGTTTTGCAGGATAAAAAAATTGACAAACAAACAAGGTTAATATTATTAGACCCCTTAGGAAATGATTATTTTTGATTGGCTACAGAACAAACCAATGCTGTTCAATGTCTTGCCTACTTACACCTAACTTATTGTAATTAACCTAGGTAAGCCTTTAAATTGCACTTTAGGCTGAATATTAGTATCTCACAAGCAATAAATAAGCTAAGCTTAGTACATTCTGTAACATTTCTATTCAAATCAGCACACAGGGATGTGATTTTAGCATCTAAAACTTTAATAATGCTACATAATCTAATATGATTAAAGAATAAAATATATATGCGTGTTAAAACTCTGAAATAGTATATAAATTCTGTTATAGGGAATAAAATGAATAATTTATGTTTGTTTATGTTGATCATTTTTGCCCTAGTAAAGTAATGACATTAGGAGTGTTGTGCATTGCGGTAATGATAAATTGCATGGAGAAATGTGTTATGTCATAAAAAATAACAGTAAATTGCAGCAAATCTTAATAGTCTTAAAAATATATTTTGATTCAGTCACCATGTACTACAAAAAATCAGCATAAATGTATTTTTAGTTGTTCATTACAGTATTTATATAAAAAAGGTGTGCATTGCGGTGATGACCTTTATATTTGATCCAGTAAAGTAATGACATTAAGATTGTTGAGCATTCCAGTAATTATGAATGGTGTGGGAAAAATGTGTTAAATGTCATTAAAAATAATGTTCAAATCTTAATGATTTAAAAAATATACTTTGATTCAGTCATGTTTAGTTGTATGTACAGCGGCAGCAAAATAGCTCATTACCGTCACATGCAGAATATTCCCCAAAATTTTATTACTATATTGCAGCATGGAACCTTCATCAACCATGATTCACAGAAAAACATTTATAATAAAAACAAACATATTTCTTACAATGTCATTACTAAAGTGCAGCAACAAACTCATTACCGAGATGCACAGAAATAAAACTATATATCAATTGCATAAAATACAATTTCTGTTACAGAAAAAAAACATATTTCTTAAATTGTCATTACTACAACATATTTGTCCCAATAAAGTAATGACATTAAGATTGTTGTGCATTGCAGTAATGATAAATTGCATGGGGAAATGTGTTAAATGTCATTAAAATAGTGGTAAATTGCATCAAATTTTAATGATCTTAAAATATACTTTGATTCAATGATGTGTCTTTGATTTACAGTGGCAGCAAAATAGCTCATTACCGTCACATGCAGAGTATTCCCCAAAATGTTATTACTATATTGCGGCATGAAACCCTCATTACTGTGATGCAAAGAAAAACATTTATAATAAAAAAATAAACATATAAGTCACAATGTCATTACTAAAGTGCAGCAAAAACTCATTGCCATGATGCACAGAAATAAAACTATATATCAATTGCATAAAATACAATTTCTGTTACAGAAAAAAAAACAAAAAACATATTTCTTAATGTCATAGCTACAACATATTTGTCCCAATAAAGTAATGACATTAGGATTGTTGTGCATTGTGGTAATGATAAATTGCATGGGGAAGTGTGTTAAATGTTAATAAATTAGTAATAAATTGCAACAAATTTCAATCATCTTAAAATATACTTTGATTCAGTGATGTGTCTTTGATTTACAGCGGCAACAAAATAGCTCATTACCGTCACATGCAGAATTTTCCCCAAAATGTTATTACTATATTGGAGCATGAAACTCTCATTACTGTGATGCACAGAAAAACATTTATAATAAAAATAAACACATTACTTACAGTGTCATTACTAAAGTGCAGCAAAAACTCATTACCATGATGCACAGAAATAAAACTATATATCAATTGCATAAAATACAATTTCTGTTACAGAAAAAAAAAAAACATATTTCTTAAAATGTCATAGCTACAACATATTTGTCCTAATGAAGTAATGACATTAGGATTGTTGTGCATTGTGGTAATGATAAATTGCATGGGGAAGTGTGTTAAATGTTATTAAATTAGTAATAAATTGCACAGAAAAACATTTATAATAAAAATAAACACATTACTTACAGTGTCATTACTAAAGTGCAGCAAAAACTCATTACCGTGATGCACAGAAATAAAACTATATATCAATTGCATAAAATATGAAACTCTCATTACTGTGATGCACAGAAAAACATTTTAAATAAAAATAAACATATTTCTTACGATTTCATTACTTAAGTGCAGAAAAAAACTCATTACCAGGATGCACAGAAATAAAACTATATATCAATTGCAAAAAATACAATTTCTGTTACAGAAAAAAAAAATCTTAAATTGTCATCATTGCATCATATTTGTCCCTGTAAAGTAATGACATTAAGATTGTTGTGCATTGCGGTAATGATAAATTGCATAGAGAATATGTATTAAATGTCATCAAAATTGTCTTCAATTGCAACAAATCCTAATGATCTTAAAAATATACTTTGATTCAGCCGTCCTTTACTACAAAAAACAGCATGAATGTATTTTTAGTTATTCATTACAGTAGTGATATAAGAAAAATGTATGTTGCTGTAATGACCCTTTGTGATGGAAAAATGTGATGAAGTAATGTTTTTAAAAGTGATTCACAATGTAATGTTTTTTTTTCTTGATTTTTTTTATTTTATTTTTTTTATTTTTATTTTTTAGTTTGTTTTAAAGTATCATTTAATTGATTTTAGCACTTCTAATTGTACAAATGTTGACTGAAGAAATCTGAGAAAGCTTATACCTTATACCAGGGGTCACCAATCTCGTTCCTGGATGTCCGGTGCCCTGCAGGGTTTAGCTCCAACTTGCCTCAACACACCTGCCTGGGTGTTTCAAGTATACCTAGTAAGACCTTGATTAGCTTGTTCAGGTGTGTTTGATTAGGATTGAAGCTCAAATCTGCAGGACACCAGACCTTCAGGAAACAAGTTTGGTGATCCCTGCCCTATACCGTACATACAATCAAACATGGACCGATCAAATGCAGTGTAGCTCTAGGTGTAAATGCAAATGTGTCTCCATTGACTACTTATTATCAGATCAACCAAAACTCAGCTTTACACCTGGCTAAATGGGACTTGCGTTAGTCTAAAGACTATAAAAGCAGCTTCAAAAATGCTGCTCTGAAGTGAATGTTTTGATATACATGAAAATGGTGATGTTTTTGACAACTAGTTCATACTACGCAATCGTGGAAGGAAGTTTAGATTGATCTGTTTCCTCTTTTACAG
Seq C2 exon
GTCGGAGACTCAGTCTCGTACTCTTAAAGGAGTGATGCGGGTGGGAATCCTGGCTAAAGGCTTGCTCCTGCGCGGAGACCGTAACGTTCAGCTAATCCTGCTAGCAGCTAACAAACCCACCGTTTCTCTTCTGAAGACTGTAGCGGAGCAACTGCCCAAACAGCTAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683:ENSDART00000122341:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=NA C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF075289=DZF=PU(17.4=75.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]