RnoINT0168813 @ rn6
Intron Retention
Gene
ENSRNOG00000020416 | Zfr2
Description
zinc finger RNA binding protein 2 [Source:RGD Symbol;Acc:1304737]
Coordinates
chr7:11339614-11340360:-
Coord C1 exon
chr7:11340194-11340360
Coord A exon
chr7:11339789-11340193
Coord C2 exon
chr7:11339614-11339788
Length
405 bp
Sequences
Splice sites
5' ss Seq
AGGGTTAGT
5' ss Score
5.02
3' ss Seq
CTGCCTCTTTGTCCCCACAGTAC
3' ss Score
10.99
Exon sequences
Seq C1 exon
TCAGGGCGGCGGCCAGAGAGCAGCGATGACCGTCATGTCATGTATAAACACGCTTCCATCTACCCCACGGAGGAGGAGCTCCAGGCTATCCAGACAGCCGTGTCCCACACAGAGCGAGCCCTCAGACTGGTGTCGGACACGCTGGCCGAGGAGAGCAGCCAGCAAGG
Seq A exon
GTTAGTGAGTGCCACGGGTTAAAGTCCTGTCCTACCCCTTTGTCTCAAGTCCCCTTGCCAGGCCTGTGACAGAGAAAGTCCCTCTTACCCTGCTTCCCTGTGTGTTGGGCTTGGTAATTCCAGGACTCAGGAAGCTGAAACAGGAGGATTGCTGTGAGTGTGAGAGTAGCCTGGGATGGACAGTAAGCCCTTGTTTCAGATATAGATAGGTAGGTAAATGGATAGATCCACAGGTAGATAGGTCAATAACATAGATAGCTGGATGGCAGACAGATAGATTGTGGGTAGCCTGGCCTGCTTGTGTGGGCTGCTGGGGGGGTGGCAGCAATGTGTTTCCCCTGTAGAAGGGCCACGTCCGTGCAGCACCCTCCCTCCTGACACACTCCTGCCTCTTTGTCCCCACAG
Seq C2 exon
TACCCTGGTGTCCCCACCACCGAGGATGCTCAAGGGAGTGGTGCGGGTTGGCATTCTGGCCAAGGGCCTGGTCCTTCGCGGGGACCACAGTGTACAGCTGACCTTGCTGTGCTCCAAGAAGCCTACGCACTCCCTGCTGCAGAGGATCAAGCAGGAGCTGCCCCGAGAGCTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020416:ENSRNOT00000061132:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.804 A=NA C2=0.153
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF075289=DZF=PU(17.4=72.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCAGCGATGACCGTCAT
R:
AGACAGCTCTCGGGGCAG
Band lengths:
327-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]