BtaALTA0033818-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36396532-36397020:-
Coord C1 exon
chr12:36396852-36397020
Coord A exon
NA
Coord C2 exon
chr12:36396532-36396683
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
AGTAAAATTTCTTTTCTTAGCTA
3' ss Score
3.92
Exon sequences
Seq C1 exon
GGCACCAAGAGGAAGGCGGTGTCAGGGTACCAGTCTCACGACGACAGCTCTGACAATTCCGAGTGCAGCTTCCCTTTCAAGTACGCGTATGGGGTCAATGCTTGGAGACACTGGGTCCGGACGAGGCGGTTCGAGGAAGACCTTCTGGTGTTAGATGGGCTGACACCTC
Seq A exon
NA
Seq C2 exon
CTAAGTCAGTGAAGTTGAAAGAGGATCTGCTCTCTCACACCACGGCTGAGCTGGACTACGGCCTGGCCCACTTTGTCAATGAGATCCGAAGGCCCAATGGGGAGAGCTACGCACCCGATAGCATCTACTATCTCTGCCTTGGAATTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-42-39,42-38-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCTTGGAGACACTGGGT
R:
CGTGGTGTGAGAGAGCAGATC
Band lengths:
118-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development