RnoALTA0045982-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37217252-37218085:+
Coord C1 exon
chr15:37217252-37217420
Coord A exon
chr15:37217934-37217978
Coord C2 exon
chr15:37217979-37218085
Length
45 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TAATTTTTATTTCTTTTTAGCCA
3' ss Score
7.13
Exon sequences
Seq C1 exon
GGAACCAAGAGGAAAGCTGTATCAGGATATCAATCTCACGACGACAGTTCTGACAATTCAGAGTGCAGCTTTCCTTTCAAGTATACGTATGGTGTAAATGCATGGAAACACTGGGTCAAAACGAGGCAGCTTGATGAAGATCTTCTGGAATTAGATGAGCTAAAGTCCT
Seq A exon
CCAAATCAGTAAAGTTAAAAGAAGATCTACTCTCTCATACTACAG
Seq C2 exon
CTGAGCTCAACTATGGCTTAGCCCATTTTGTCAATGAGATCCGACGACCAAATGGAGAGAATTATGCCCCTGACAGCATCTATTATCTCTGCCTTGGAATACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734-36-37,36-36,36-35-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTGGGTCAAAACGAGGC
R:
TGCTGTCAGGGGCATAATTCT
Band lengths:
141-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]