DreALTA0033456-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21625310-21625943:-
Coord C1 exon
chr9:21625763-21625943
Coord A exon
chr9:21625453-21625455
Coord C2 exon
chr9:21625310-21625452
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TGTTTTTCCTCTCACTTCAGCAG
3' ss Score
7.79
Exon sequences
Seq C1 exon
GGCCAGAAGAGGCGGGCAGTAGAGGAAGAGTCTTCATCCTCGTTGTCTTCTTCTCCAGCAGCAGAGTCCTCAGCAGTTGACAGCTCTTTCCCCTTAAGCTCCAGATATGGCTTAAACGCATGGAGAAGATGGGCCACAACTGAAGACTCACCGTCCAAAGGAAAGGAGAGCCAGAAACAAG
Seq A exon
CAG
Seq C2 exon
TTAGTTTAAAAAGCAGTCTCCTGTCCCTGAGCCAAGAAGAGTTGAATCAGTCTTTATCCCGGTTTGTCAAAGAAGTACGTCGTCCCAATGGTGAACACTACAGTCCAGACAGCCTCCTTTACCTCTGTCTGGGTATCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353-28-24,28-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.713 A=NA C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGATGGGCCACAACTG
R:
ACTCTTCTTGGCTCAGGGACA
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]