HsaALTA1020771-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20066851-20067390:+
Coord C1 exon
chr13:20066851-20067019
Coord A exon
chr13:20067239-20067283
Coord C2 exon
chr13:20067284-20067390
Length
45 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TTTATTTTATGTATTTTTAGCTA
3' ss Score
7.36
Exon sequences
Seq C1 exon
GGAGCCAAGAGAAAGGCTGTATCAGGATACCAGTCTCATGATGATAGTTCTGACAATTCAGAATGCAGCTTTCCTTTCAAATATACGTATGGCGTAAATGCATGGAAACACTGGGTCAAAACTAGGCAACTTGATGAAGATCTTCTGGTATTAGATGAGTTAAAATCTT
Seq A exon
CTAAATCAGTAAAGTTAAAAGAGGATCTACTCTCTCACACCACAG
Seq C2 exon
CTGAGCTTAACTATGGGTTAGCTCATTTTGTCAATGAGATCCGACGGCCAAATGGAGAGAATTATGCACCTGACAGCATCTATTACCTTTGCCTTGGAATACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-79-79,79-78-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATGGCGTAAATGCATGGA
R:
TTTGGCCGTCGGATCTCATTG
Band lengths:
136-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains