BtaALTA0033828-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110935123-110937583:-
Coord C1 exon
chr3:110937488-110937583
Coord A exon
chr3:110935261-110935274
Coord C2 exon
chr3:110935123-110935260
Length
14 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TGTTTTCTACCTTTCCACAGTCC
3' ss Score
10.59
Exon sequences
Seq C1 exon
GAGTTGAACATGCCTCATCTAGCCCGTGTTCTGACCCATTAGGAAGTACTCAAGAGCATGCACTCTCTCAAGAATCTTCAGAGCCAGGCTGTAAAG
Seq A exon
TCCGCTCTATCAAG
Seq C2 exon
CTGAAGGAAGATATTCTGTCCTGCACTTTTGCTGAGTTGAGTTTAGGCTTATGCCAGTTTATTCAAGAAGTGCGGAGACCAAATGGTGAAAAATATGATCCAGACAGTATCTTATACTTGTGCCTTGGAATTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-30-33,30-32-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCTTCAGAGCCAGGCTGT
R:
TTGGTCTCCGCACTTCTTGAA
Band lengths:
107-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development