HsaALTA0009718-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35870974-35873653:+
Coord C1 exon
chr1:35870974-35871069
Coord A exon
chr1:35873609-35873622
Coord C2 exon
chr1:35873623-35873653
Length
14 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
TGTTTTCTACCTTTCCACAGTCC
3' ss Score
10.59
Exon sequences
Seq C1 exon
GGGTTGAACAGGCCTCATCTAGCCCACGTTCTGACCCCTTAGGAAGTACTCAAGACCATGCACTCTCTCAAGAATCCTCAGAGCCAGGCTGTAGAG
Seq A exon
TCCGCTCTATCAAG
Seq C2 exon
CTGAAGGAAGACATTCTGTCCTGCACTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-42-46,42-45-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTTCTGACCCCTTAGGA
R:
GTGCAGGACAGAATGTCTTCCT
Band lengths:
99-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)