BtaALTA0033871-3/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000015348 | ZNF189
Description
Bos taurus zinc finger protein 189 (ZNF189), mRNA. [Source:RefSeq mRNA;Acc:NM_001099113]
Coordinates
chr8:92751543-92752502:+
Coord C1 exon
chr8:92751543-92751725
Coord A exon
chr8:92752376-92752420
Coord C2 exon
chr8:92752421-92752502
Length
45 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CAGAAATCATACTATTTCAGGGC
3' ss Score
4.98
Exon sequences
Seq C1 exon
GGTCGTGACCGCTCGGGGCAGGACCTGGCCAGATCCAGCCTAGAGGCCTCACTTTCTTCGGGCCTAATATTCAGCGGCCGGGTAGGCCTTGCCAGGGCCTCCTTTTCGTGCGGCCACCCGGGATTCCTGCCCTGATTTTCTGTCTAAGAGATGGCCTCGCCGAGTCCCCCGCCACAGCCAAAG
Seq A exon
GGCTTGCTGACATTTGAGGATGTGGCTGTGTTTTTTACCCAGGAG
Seq C2 exon
GAGTGGGATTATCTGGATCCAGCTCAGAGAAGCCTGTATAAAGATGTCATGATGGAGAATTATGGAAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015348-1-3,1-2,1-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.328
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=FE(93.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCAGGGCCTCCTTTTC
R:
ACAGGCTTCTCTGAGCTGGAT
Band lengths:
133-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development