HsaALTA0009752-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000136870 | ZNF189
Description
zinc finger protein 189 [Source:HGNC Symbol;Acc:12980]
Coordinates
chr9:104161155-104162292:+
Coord C1 exon
chr9:104161155-104161471
Coord A exon
chr9:104162166-104162207
Coord C2 exon
chr9:104162208-104162292
Length
42 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CAGAAATCATACTATTTCAGGGG
3' ss Score
4.31
Exon sequences
Seq C1 exon
AAGGAGGAGGAACTGGCAGCGGGGAGGAGGCTCTAGCGAGGCCTGAAAGGCTGCGTAACCAGGCAGGAGTAGGGGTTGGGGTTCGGGGTTGGGGGACAGCCAGGGATCGCGTCTGATATGCTGTTGGGGTCGTGACCGTCTGGGGGCCGAGGCAGGCACTGGCCAGACCCAGCCAGGGATCCTCGTATTCGTCGAGCCTAATTTCCAGCAGCCGGGTAGGCCTCACCAGAGGCTCCTTTCCGTGAGGCCGCCCCCAATTCCTGCCCCTATTCTCTGCCTGGGAGATGGCTTCCCCGAGCCCCCCGCCGGAGTCGAAG
Seq A exon
GGGTTGCTGACATTTGAGGATGTGGCTGTGTTTTTTACCCAG
Seq C2 exon
GAGGAGTGGGATTATCTGGACCCAGCTCAGAGAAGCCTGTATAAAGATGTCATGATGGAGAATTATGGAAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136870-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.924 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(3.2=9.1)
A:
NA
C2:
PF0135222=KRAB=FE(90.3=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATTTCCAGCAGCCGGGTAG
R:
AGCTGGGTCCAGATAATCCCA
Band lengths:
146-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)