HsaEX0073137 @ hg19
Exon Skipping
Gene
ENSG00000136870 | ZNF189
Description
zinc finger protein 189 [Source:HGNC Symbol;Acc:12980]
Coordinates
chr9:104161310-104162292:+
Coord C1 exon
chr9:104161310-104161471
Coord A exon
chr9:104161677-104161812
Coord C2 exon
chr9:104162208-104162292
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCTTTTTCTAGAGA
3' ss Score
10.64
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GCACTGGCCAGACCCAGCCAGGGATCCTCGTATTCGTCGAGCCTAATTTCCAGCAGCCGGGTAGGCCTCACCAGAGGCTCCTTTCCGTGAGGCCGCCCCCAATTCCTGCCCCTATTCTCTGCCTGGGAGATGGCTTCCCCGAGCCCCCCGCCGGAGTCGAAG
Seq A exon
AGAGACTTGATAAATCGGCCTGAGAAAATAAGTAATGCTCCAGACTAGCTCTCTCATTTGTGAGTTCTCCAGGTGAAGCACCATTTTTGACCTTCCCTTGTGTCTTCTGTTCCTGGCACAGTGCCTGGACCCCAAG
Seq C2 exon
GAGGAGTGGGATTATCTGGACCCAGCTCAGAGAAGCCTGTATAAAGATGTCATGATGGAGAATTATGGAAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136870_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=1.000 C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=FE(90.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCAGACCCAGCCAG
R:
CCAGTGAGACCAGGTTTCCAT
Band lengths:
244-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)