BtaALTA0033946-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016077 | ZNF317
Description
zinc finger protein 317 [Source:HGNC Symbol;Acc:HGNC:13507]
Coordinates
chr7:14742555-14743436:+
Coord C1 exon
chr7:14742555-14742674
Coord A exon
chr7:14743294-14743370
Coord C2 exon
chr7:14743371-14743436
Length
77 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
3' ss Seq
ATGGGTTCTCTCTTCTCTAGCTA
3' ss Score
8.31
Exon sequences
Seq C1 exon
ATGTCCGCTCCAGGAGACCCATGAGAGAGAAAGTAGCTTCCTGGTCCAAGGCCCTGTTCTTCAGGCAGATTTACTGTCATTCTCGCAAGATGGCAGCTCTCGGCCTGGCTCCCACATGTG
Seq A exon
CTATGCCCAGTCAGGAGCCTGCCTATATCCATGAGTCAGAAGTTCCTCTTTCTTCAAAAGACCATTCCTGTCCCCAG
Seq C2 exon
GATGTGGACCTGTTTGCATGCAATGGCCTGGAGCCTCATACATCAACCAGTGTTGAACCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016077-5-3,5-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGGAGACCCATGAGAG
R:
CTGGGATGGTTCAACACTGGT
Band lengths:
180-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development