MmuALTA0020573-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000057551 | Zfp317
Description
zinc finger protein 317 [Source:MGI Symbol;Acc:MGI:107775]
Coordinates
chr9:19641066-19642103:+
Coord C1 exon
chr9:19641066-19641254
Coord A exon
chr9:19641964-19641987
Coord C2 exon
chr9:19641988-19642103
Length
24 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
ACTTTCTTTTCTTGCCTTAGCTA
3' ss Score
7.99
Exon sequences
Seq C1 exon
GTTGATAACCTGTCTGATTATGAGTCAAGAGGAAATGTCAAGAAACAAAATTCAGTGTTCTCCTCACTAAGTAAAAGACATAGCCTTTGAAGAATACCTTGTGGCAATTGTCCACGTAGGAATGCAGTGCTTCTTCAGGTACTCCCAGTGCCCCACAGATGGCTACCATCAGTCTATCTCCCAAGTTTG
Seq A exon
CTATGTCCTCTCTGGACTCTGCAG
Seq C2 exon
ATAACCAGGAATCAGAATTTTCTCTTCCATCAAAATATGATTCTTGTCAGCAGAGTTTGGGTTTGTTTGCTTGCCATGCTCCAGAGCCTGATACACCAGCTCGTGTTTGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057551-17-13,17-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACCATCAGTCTATCTCCCA
R:
AGCATGGCAAGCAAACAAACC
Band lengths:
109-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types