BtaALTA0033949-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016191 | ZNF32
Description
Bos taurus zinc finger protein 32 (ZNF32), mRNA. [Source:RefSeq mRNA;Acc:NM_001046119]
Coordinates
chr28:46028360-46029868:+
Coord C1 exon
chr28:46028360-46028499
Coord A exon
chr28:46029726-46029767
Coord C2 exon
chr28:46029768-46029868
Length
42 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TCCCTGTTCTTCTCACTCAGCAT
3' ss Score
7.47
Exon sequences
Seq C1 exon
GTACTCAAGTACAGCCCATGGAAGAATCATATGAAGAGGTGGTGATTAAGCTCATACAGCAGGAGTGGACATGTTTGGATTTCCAACAGCTACCCTGCTGGACTGTCATGGAAGATATGCCCAGAATGTAGCCTTTTTCA
Seq A exon
CATATTGGTGCTTCTTACATGACTTCCCTCTCATTTTACCAG
Seq C2 exon
ATGTGATGACAGAAGCCCACCACAAATATGATCAGTCTGAGGCCACAGGATCCTCAAGCTGGGATTTCCAGAGTTCTTTCAGAAGAGAGAAGCTGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016191-6-3,6-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.0),PF079757=C1_4=WD(100=21.5),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF0013017=C1_1=WD(100=25.9),PF134651=zf-H2C2_2=WD(100=10.4),PF0009621=zf-C2H2=WD(100=9.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGAGTGGACATGTTTGG
R:
TCCTGTGGCCTCAGACTGATC
Band lengths:
133-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development