BtaINT0165266 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016191 | ZNF32
Description
Bos taurus zinc finger protein 32 (ZNF32), mRNA. [Source:RefSeq mRNA;Acc:NM_001046119]
Coordinates
chr28:46028360-46030707:+
Coord C1 exon
chr28:46028360-46028499
Coord A exon
chr28:46028500-46029767
Coord C2 exon
chr28:46029768-46030707
Length
1268 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CTTCCCTCTCATTTTACCAGATG
3' ss Score
10.28
Exon sequences
Seq C1 exon
GTACTCAAGTACAGCCCATGGAAGAATCATATGAAGAGGTGGTGATTAAGCTCATACAGCAGGAGTGGACATGTTTGGATTTCCAACAGCTACCCTGCTGGACTGTCATGGAAGATATGCCCAGAATGTAGCCTTTTTCA
Seq A exon
GTGAGTCTGTTGATTGCTGGGATGCCAAGTCACAATAATCAGTGTCCCTGTTCTCAGCACTGGACAACAGGCTGGGGATGCAGAGAAGATGTTCCTTTGGTGAAGCTCACTATTTTTAGGGGTTACAGGGAAAGCCTACAAGCTTGAGTTAGAAACAGCAAGGGAACAGTCTTGATATGGAGGTGGTATCTGAGAAAATGAATGAGCAGTTTTAAATCTCAGCACAGTGACTGAATGAGAAATGGTAAGACAGAGGAACAAGTTGAAATCTACCTAGGATGACTCCAAGAAAACTATTATTAGTGATGAATGGACTCATATTTAAAGTGCAGTAGGAGGCTCATATACAGGGCAGTGTTGGGAAGTACTGTCAATATCTGCACAGGAAGGGTTGAGAAAAACTTCCAAACCAAAACTGACTTCACTTTCACCATAGCTTAGCAGATTGAAACAGCATGGATTTTAAAGGGGAAAATTCCCTGGATCAAATTCTATGATTGCCATGACTGGATCTGTGGTATCAGACAAGTTATTTAACCTTCTTGAGCACCAGGCTCTTCATCTGCAAAATGGGACAGTAAGCTCTATCCTGCAGGTCTGCAGTGACTAAAATGAATAGATGTAAAGTACCTAGGATTTTGCTGCATATATCCTGACAGCGTAGGCTTACTCTACTCCACTGTTAGGGAGAGCAGACTAGAGCAGAGGTAGATTTCTCATGAAGCCTACAAAACTTAAGCTTCAGGAGCTTTCCCTTACACCGGTCTCTTCAAGGTCCTATCCCTACTTTTATACTGCTTTTTAATGGGAATCTCTCCAAAATTTAAAACTTTAGGCCCCATACAACCTGGATCCACACCTGTCTTGGTGTCAGATAAAACTTCGGTATGGGACTAAATGTGATCTTATATAGTTTGATTTTTCTGGCTTGTTTTCTTATCTGTAAAATGGAGATAATCATGTCTATACACAAGACTATTTGGGAAGCTAAATTAAACTAAATTTAGAGGCAGTACACTGCTACAGAGCATGCCTGTGTCTGAATCCTAATTCTGTGCTTACCTAGCCAAGTGATCTTTGACAACCTCCCTATACGTTCATTTCCTTAACTGTAACAAAAAATTGTTTTCGGGATTAAGTTATCTATGCAAAGTTTATAGTATAATATTTGGCACATAATGAGCACTCAAAGCACTGTTTCTTTTTTCCCTGTTCTTCTCACTCAGCATATTGGTGCTTCTTACATGACTTCCCTCTCATTTTACCAG
Seq C2 exon
ATGTGATGACAGAAGCCCACCACAAATATGATCAGTCTGAGGCCACAGGATCCTCAAGCTGGGATTTCCAGAGTTCTTTCAGAAGAGAGAAGCTGGAACAAAAATCCCCAGATTCTAAGACACTACAGGAAGATTCACCTGGAGTGAGACAGAGGGCCTATGAGTGCCAGGAATGTGGAAAGTCCTTCAGGCAGAAGGGTAGTCTAACATTACATGAGAGAATCCACACCGGTCAGAAGCCCTTTGAGTGTACCCATTGTGGAAAAAGCTTTAGGGCCAAAGGCAATCTTGTTACACATCAGCGAATACACACAGGAGAGAAGCCCTATCAGTGCAAGGAGTGTGGGAAAAGCTTTAGTCAACGAGGTAGTCTGGCCGTTCATGAAAGACTCCACACGGGACAGAAACCCTATGAGTGTGCTATTTGTCAGAGAAGCTTCAGGAATCAAAGTAACCTTGCTGTTCACAGAAGAGTTCATAGTGGTGAGAAGCCCTATAGATGTGATCAGTGTGGAAAAGCCTTCAGTCAGAAAGGAAGTTTAATTGTTCATATCAGAGTCCACACAGGCCTGAAACCCTATGCCTGTGCACAATGCAGGAAGAGTTTCCACACCAGGGGGAATTGTGTTCTGCATGGCAAAATCCACACAGGAGAGACACCCTATCTGTGTGGCCAGTGTGGGAAAAGCTTCACTCAGAGAGGGAGTCTGGCTGTGCACCAGCGAAGCTGCTCACAAAGGCTCACCCTGTAACCACTCTCTTCAGAGGAAGTTCTCTTTATGAATTAACAGCATAAAATCATCTGAGATTAAACAGCCTATCCAATTTTATGGAATGAATGGAGACTCCTTCAGAAAGACCATCACTGGGTAGAGCAAACTGAGTTTTCTTTTTTCCCCCCAAATGAGTATGAAAAATAAATGTCTTGTTTATTATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016191:ENSBTAT00000025340:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.0),PF079757=C1_4=WD(100=21.5),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF0013017=C1_1=WD(100=25.9),PF134651=zf-H2C2_2=WD(100=10.4),PF0009621=zf-C2H2=WD(100=9.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGAGTGGACATGTTTGG
R:
ACAATGGGTACACTCAAAGGGC
Band lengths:
343-1611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]