MmuINT0179615 @ mm10
Intron Retention
Gene
ENSMUSG00000059689 | Zfp637
Description
zinc finger protein 637 [Source:MGI Symbol;Acc:MGI:2448537]
Coordinates
chr6:117843253-117845956:+
Coord C1 exon
chr6:117843253-117843392
Coord A exon
chr6:117843393-117844982
Coord C2 exon
chr6:117844983-117845956
Length
1590 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CTGTTCTTCTCCCTGTTCAGCAT
3' ss Score
9.88
Exon sequences
Seq C1 exon
GTTCTCCAGACCAGCCCATGGAAGAATCATATGAAGAGGCGGTGATCAAAGTCAGCGAGCAGGAGTGGACATGTTTGGGTTCCCAACAGCTACCCTGCTGGACTGTCATGGAAGATACGCCCAGAATGTAGCCTTTTTCA
Seq A exon
GTGAGTGAGTCAGCTGGTTGCTGGGATGACGTCAGAGCCCCTATAAGAAGATGCATTCATTTGGTGAAGCTCACTGCTCTACAGGTTGCAGGGAAAGCCTGCAAGCTGGGATTGGAAATGATAATCAAAACAAAGCAAGAAAACAGTTTGAAGCCGGACAGTGGTGGTGCATGTCTTTAATCCCCGCACTTAGGAGGACGAGGCAGGCGGATCTGTGAGTTAGAGGCTAGCCTGGTCTGTAGAATGAGTTCTAGCACAGCCAAGGCTATATAGAGAAACCCTGTCTTAAGGGAGAAAGAAAGAAAAAAGGAAAAGCAATTTGATATAGAGGTGATGTTGGGGTTGTCTCAGGCTGAATGAACCTTGAACTCTGAGCTCTAACCCCGAGTATGAGACACATAGGGAAACAGGGAAGAGCTAGAGTGCACGGCCTTGTCCATTTCCAATGTAGCTTAATAGGCCAGAATAACGTGGACTTTAAAAGAAAGAATTCCAATCCTGTTTGCAGTATTAAAGAAGTTCCTTAAGCTTCAGGCTTTTCATCTGTACACTGGAACAGACAGTAAGCTGCATCTTGTAAGAATTCGAGGCCTAGACAGAAAATATCTGAAATTATACCCTCATTTTCTGAGATCATGAACGACTGTTAGAGAACAGACTGAGATAGGGCCACTGTGATGAAGCCATTGCAGTGTTAGCCTAAGGGCTTCCCACTGGGAGTGTTCTCGCCTTTGCTTGGCTTTGCTTGTTTTAAAGGGGTGCTTTTAAGGTTTTAAAGCTTTGCTCCCTCCGTATCCTGACTCCACACCTGTTTGGGAGTCACTTAAAACTTAGATAAAAGGCTCTGTGTGATTCTCTATAATTTCCTTAATTTTATGAGCCCTTTGTTTTATTTTGTCTTTTTGGACCAGGCTTTCTCTGAACCCCTGGCTATTCTGGAACTCACTTTGTAGACCAGGCTGACCTTGAACTCACAGAGATCCTCCTGCCTCTGACTCCTGAGCACTGAAATCAAAGGTGTACACCACCACTGCCTGGCCTTATGCACCCTTTTTTGGCTTATAGCTTGGGGGGTAGCACTGGCTGTTCTTCCAGAGGTCCCAGGTTCAATCCCAAGCACCCCCTCCAAAAAAAAAAAACAAAAAACTAATAATAATAATACTGTCTACTCCCCAAGAATGTGAGAGGCTCCATTAATTTTAAAGGTGAGCTATGGAGCATGCTCATAAATGAACCCCAGAGTAACGGTTATGTGATCGCCCCATGCTCCCAGTTCCTTATCTATAGCAGTCTCGGGGTGGGTTTCAGGACTCAGTTATGTACACGGAGCCCAGTTCCTTATCTATAGCAGTCTCGGGGTGGGTTTCAGGACTCAGTTATGTACACGGAGCCTAGTTCCTTATCTATAGCAGTCTTGGGGTGGTTTTCAGGACTCAGTTATGTACACAGAGCCTAGTTCCTTATCTATAGCAGTCTCGGGGTGGTTTTCAGGACTCAGTTATGTACACAGAGTTCGTAGGATCATGCCCGGCACATCAGAAGCCCTCTAAGGATTATGTTTCTCTTCTCCCTGTTCTTCTCCCTGTTCAG
Seq C2 exon
CATATTGGTGCATCTTACATGACTTCCCTCTCGTTTTACCAGATGTGATGACAGAAGCCCACAAGTATGATCCTTCAGAGGCCACAGGATCCTCAAGCTGGGATTTCCAGAGCTCTTTCAGAAGAGAGAAGCTGGAACAAAAGTCCCCGGAGTCTAAGGCCCTCCAGGAAGACTCACCTGGAGTGAGGCAGAAGGTCTATGATTGCCAGGAATGTGGGAAGTCTTTCCGGCAGAAAGGGAGCCTAACGCTGCACGAGAGAATCCACACTGGTCAGAAGCCCTTTGAGTGCACCCAGTGTGGGAAAAGCTTCAGGGCCAAGGGCAACCTGGTTACACATCAGCGGATCCACACAGGAGAGAAGCCCTATCAGTGCAAAGAGTGTGGGAAAAGCTTCAGTCAGCGAGGCAGCCTGGCTGTCCACGAGAGACTCCACACTGGACAGAAACCCTACGAGTGTGCCATTTGCCAGAGGAGCTTCCGAAATCAAAGTAACCTCGCCGTGCACCGAAGAGTTCACAGCGGTGAGAAGCCCTATAGATGCGACCAGTGTGGAAAAGCTTTCAGCCAGAAAGGAAGCTTAATTGTGCACATCCGCGTCCACACGGGTCTGAAGCCCTACGCGTGTTCCCACTGCAGGAAGAGCTTCCATACCAGGGGCAACTGTCTCCTGCATGGAAAAGTCCACACGGGAGAGACACCCTATCTCTGTGGCCAGTGTGGGAAAAGTTTCACTCAGAGAGGGAGCCTGGCTGTGCACCAGCGAAGCTGCTCACAACGGCTCACTCTGTAAACACCCCTCAAAGGAAGTTCTTCTTACCCATTGAGAGTACAAAGCCCTCAGTAATCAAGAGTTTTACCCAGTGTCATAGGGTAAGTGGAAGTTCTTTCAGAAGGACCAGCCTTTGGTAGGGCAAACTGACTTTTTCCCTCTCCCCCAAATGAATATGAGAAATAAATGTCCTGTTTATCATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059689:ENSMUST00000112860:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=9.5),PF079757=C1_4=WD(100=20.5),PF134651=zf-H2C2_2=WD(100=9.8),PF134651=zf-H2C2_2=WD(100=9.8),PF134651=zf-H2C2_2=WD(100=9.8),PF0013017=C1_1=WD(100=24.6),PF134651=zf-H2C2_2=WD(100=9.8),PF134651=zf-H2C2_2=WD(100=9.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACATGTTTGGGTTCCCA
R:
CCAGTGTGGATTCTCTCGTGC
Band lengths:
347-1937
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types