Special

MmuINT0179615 @ mm9

Intron Retention

Gene
ENSMUSG00000059689 | Zfp637
Description
zinc finger protein 637 [Source:MGI Symbol;Acc:MGI:2448537]
Coordinates
chr6:117793271-117795974:+
Coord C1 exon
chr6:117793271-117793410
Coord A exon
chr6:117793411-117795042
Coord C2 exon
chr6:117795043-117795974
Length
1632 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CTTCCCTCTCGTTTTACCAGATG
3' ss Score
11.04
Exon sequences
Seq C1 exon
GTTCTCCAGACCAGCCCATGGAAGAATCATATGAAGAGGCGGTGATCAAAGTCAGCGAGCAGGAGTGGACATGTTTGGGTTCCCAACAGCTACCCTGCTGGACTGTCATGGAAGATACGCCCAGAATGTAGCCTTTTTCA
Seq A exon
GTGAGTGAGTCAGCTGGTTGCTGGGATGACGTCAGAGCCCCTATAAGAAGATGCATTCATTTGGTGAAGCTCACTGCTCTACAGGTTGCAGGGAAAGCCTGCAAGCTGGGATTGGAAATGATAATCAAAACAAAGCAAGAAAACAGTTTGAAGCCGGACAGTGGTGGTGCATGTCTTTAATCCCCGCACTTAGGAGGACGAGGCAGGCGGATCTGTGAGTTAGAGGCTAGCCTGGTCTGTAGAATGAGTTCTAGCACAGCCAAGGCTATATAGAGAAACCCTGTCTTAAGGGAGAAAGAAAGAAAAAAGGAAAAGCAATTTGATATAGAGGTGATGTTGGGGTTGTCTCAGGCTGAATGAACCTTGAACTCTGAGCTCTAACCCCGAGTATGAGACACATAGGGAAACAGGGAAGAGCTAGAGTGCACGGCCTTGTCCATTTCCAATGTAGCTTAATAGGCCAGAATAACGTGGACTTTAAAAGAAAGAATTCCAATCCTGTTTGCAGTATTAAAGAAGTTCCTTAAGCTTCAGGCTTTTCATCTGTACACTGGAACAGACAGTAAGCTGCATCTTGTAAGAATTCGAGGCCTAGACAGAAAATATCTGAAATTATACCCTCATTTTCTGAGATCATGAACGACTGTTAGAGAACAGACTGAGATAGGGCCACTGTGATGAAGCCATTGCAGTGTTAGCCTAAGGGCTTCCCACTGGGAGTGTTCTCGCCTTTGCTTGGCTTTGCTTGTTTTAAAGGGGTGCTTTTAAGGTTTTAAAGCTTTGCTCCCTCCGTATCCTGACTCCACACCTGTTTGGGAGTCACTTAAAACTTAGATAAAAGGCTCTGTGTGATTCTCTATAATTTCCTTAATTTTATGAGCCCTTTGTTTTATTTTGTCTTTTTGGACCAGGCTTTCTCTGAACCCCTGGCTATTCTGGAACTCACTTTGTAGACCAGGCTGACCTTGAACTCACAGAGATCCTCCTGCCTCTGACTCCTGAGCACTGAAATCAAAGGTGTACACCACCACTGCCTGGCCTTATGCACCCTTTTTTGGCTTATAGCTTGGGGGGTAGCACTGGCTGTTCTTCCAGAGGTCCCAGGTTCAATCCCAAGCACCCCCTCCAAAAAAAAAAAACAAAAAACTAATAATAATAATACTGTCTACTCCCCAAGAATGTGAGAGGCTCCATTAATTTTAAAGGTGAGCTATGGAGCATGCTCATAAATGAACCCCAGAGTAACGGTTATGTGATCGCCCCATGCTCCCAGTTCCTTATCTATAGCAGTCTCGGGGTGGGTTTCAGGACTCAGTTATGTACACGGAGCCCAGTTCCTTATCTATAGCAGTCTCGGGGTGGGTTTCAGGACTCAGTTATGTACACGGAGCCTAGTTCCTTATCTATAGCAGTCTTGGGGTGGTTTTCAGGACTCAGTTATGTACACAGAGCCTAGTTCCTTATCTATAGCAGTCTCGGGGTGGTTTTCAGGACTCAGTTATGTACACAGAGTTCGTAGGATCATGCCCGGCACATCAGAAGCCCTCTAAGGATTATGTTTCTCTTCTCCCTGTTCTTCTCCCTGTTCAGCATATTGGTGCATCTTACATGACTTCCCTCTCGTTTTACCAG
Seq C2 exon
ATGTGATGACAGAAGCCCACAAGTATGATCCTTCAGAGGCCACAGGATCCTCAAGCTGGGATTTCCAGAGCTCTTTCAGAAGAGAGAAGCTGGAACAAAAGTCCCCGGAGTCTAAGGCCCTCCAGGAAGACTCACCTGGAGTGAGGCAGAAGGTCTATGATTGCCAGGAATGTGGGAAGTCTTTCCGGCAGAAAGGGAGCCTAACGCTGCACGAGAGAATCCACACTGGTCAGAAGCCCTTTGAGTGCACCCAGTGTGGGAAAAGCTTCAGGGCCAAGGGCAACCTGGTTACACATCAGCGGATCCACACAGGAGAGAAGCCCTATCAGTGCAAAGAGTGTGGGAAAAGCTTCAGTCAGCGAGGCAGCCTGGCTGTCCACGAGAGACTCCACACTGGACAGAAACCCTACGAGTGTGCCATTTGCCAGAGGAGCTTCCGAAATCAAAGTAACCTCGCCGTGCACCGAAGAGTTCACAGCGGTGAGAAGCCCTATAGATGCGACCAGTGTGGAAAAGCTTTCAGCCAGAAAGGAAGCTTAATTGTGCACATCCGCGTCCACACGGGTCTGAAGCCCTACGCGTGTTCCCACTGCAGGAAGAGCTTCCATACCAGGGGCAACTGTCTCCTGCATGGAAAAGTCCACACGGGAGAGACACCCTATCTCTGTGGCCAGTGTGGGAAAAGTTTCACTCAGAGAGGGAGCCTGGCTGTGCACCAGCGAAGCTGCTCACAACGGCTCACTCTGTAAACACCCCTCAAAGGAAGTTCTTCTTACCCATTGAGAGTACAAAGCCCTCAGTAATCAAGAGTTTTACCCAGTGTCATAGGGTAAGTGGAAGTTCTTTCAGAAGGACCAGCCTTTGGTAGGGCAAACTGACTTTTTCCCTCTCCCCCAAATGAATATGAGAAATAAATGTCCTGTTTATCATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059689-Zfp637:NM_177684:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.107
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=10.0),PF079757=C1_4=WD(100=21.6),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF0013017=C1_1=WD(100=26.0),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=9.6)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000108482





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000115733, ENSMUSP00000123106, ENSMUSP00000130144
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr10:43644802-43646063 
ALTERNATIVE
HsaINT0186843
(ZNF32)
Human
(hg19)
chr10:44140250-44141511 
ALTERNATIVE
HsaINT0186843
(ZNF32)
Rat
(rn6)
chr4:149880320-149881893 
ALTERNATIVE
RnoINT0168496
(Zfp637)
Cow
(bosTau6)
chr28:46028500-46029767 
ALTERNATIVE
BtaINT0165266
(ZNF32)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr2:451604-452079 
GgaINT0002164
([1])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGTGATCAAAGTCAGCGAGCA

				
R: 
GCACTCAAAGGGCTTCTGACC

				
Band lengths: 
348-1980

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"