RnoINT0168496 @ rn6

Intron Retention

Gene

ENSRNOG00000023065 | Zfp637

Description

zinc finger protein 637 [Source:RGD Symbol;Acc:1559850]

Coordinates

chr4:149880180-149882824:+

Coord C1 exon

chr4:149880180-149880319

Coord A exon

chr4:149880320-149881893

Coord C2 exon

chr4:149881894-149882824

Length

1574 bp

Sequences

Splice sites

5' ss Seq

TCAGTGAGT

5' ss Score

7.68

3' ss Seq

CTTCCCTCTCGTTTTACCAGATG

3' ss Score

11.04

Exon sequences

Seq C1 exon

GTACTCCAGCCCAGCCCATGGAAGCATCATACGAAGAGGCGGTGACCAAAGTCATCGAGCAGGAGCGGACATGTTTGGGTTTCCGACAGCCACTCTGCTGGACTGTCATGGAAGATACGCGCAGAATGTAGCATTTTTCA

Seq A exon

GTGAGTGCACCAGCTGCTTGCTGGGATGACTTCAGAGTCCCTCTAAGAAGATGCAGTCATTTGGTGAAGCTCACTGTTCTTCCGGTCGCAGGAAAAGCCTGCAGGCTGAATTGGAAGGGAATTGGAAGGGAGAGTCAAAAACCAAGCAAGAAAACAGTTTGAGGCAGGACGATGGTGGTGCATGCCTTTAATCCCTGCACTTATGAGGCAGAGGCAGGTGGATCTCTTGAGTTAGCCTGTTCTGTAGATTGAGTTCTAGCACAGCTGGGGCTATATAAAGAAACCCTGTCTTGGGGGAAAAGAAAAAAGAAAAGCAATTTGATGTGGAGGAGATCTCGAGGTCGTCTCTGACTGAAGGAGAGCTCTCTGCTCTAACACTGAGTATGAGAAAGATAGGGAAACAAGGAAGAGAGAGAATGTATATGCTTGTTCAGTGCTTCTGTAGCTTAATGCGCAGGGAATAACATGGGTTTTAGAAGAAGGAATCCCAGTCCTGTTTGCAATACTAAAGAAGTTCCTGAAGCTTCAGGCTTTTCATCTGTGCAATGGAACAGACAGTAAGCTGCATCTTGTAAGAATTCAAGGCATGGACGGAAAATATCTGAAATTATACCAAATATTTTCTGAGATCATAAACGTCTATAAGGGAGCAGACTGGGGTAGGGTGACTGTGATGAAGCCAGTGCCGGGTAAGCCTTGTGGCTTCTCACTGGGATCCGTCTCTCCTTTGCTTGGCTTTATGCTTGTTTGAACGCAGTGCTTTTAAGCTTTAGTCCCTTCCTATCCTGACTCTACACCTGTTTGGGAGTCAGCTAAAACTTAGGTAAAAGCGGGGTTGGGGATTTGGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGTCCTGGGTAAGGTCCTGGGTTCCGTACCCAGCCCCGGAAAAAAAGGAAAAAAAAAAAACTTAGGTAAAAGGTTCTGTGTGATTCTCTATATAGTTCCCTTAATTTCATGAGCCCTTTGTTTGTTTTGTTTTATTATCTTTTTGGACCAGGCTTTCTCTGTACCCCTGGCTATTCTGGAACTCACTTTGTAGACCAGGCTGACCCTGAACTCACAGAGACCTGCCTGCCCCTACCTCCTGAGCACTGGACCCAAAGATGTAAACCACCACCACCTGGCCTGTGAGCCTCTTTTTTTGGGGGGCTTATGAAATGATCTTGTGAGGGCTGGAGAGATAGATGACTTAGCGGGTAGCACTGGCTGTTCTTCCAGAAGACCCAGCCCCAAGCACCTCCTCCAAAAAAATTAATAGTAATAATACTATCTACGTCCCAAGAATTTGAGAGGCCACATTAAATTTGAAGGCCTAGCTATGGAGCATGCTAATATTTGAATCCTAGATTAATGGTTAGGTGATCTCCCCATGTTCTTAGTTTCTTATCTATGCAATCTCAGGATGGTCAAGACTCAGTTATACAGAGTTCGCAGGCTAACGCCTGGCACAGAAGCCCGCTAAGGATTGTGTTTCTCTCTCCCTGTTCTTCTCACTCAGCGTATTGGTGCATCTTACATGACTTCCCTCTCGTTTTACCAG

Seq C2 exon

ATGTGATGACAGAAGCCCACAAGTATGATTCTTCAGAGGCCACAGGATCCTCAAGCTGGGATTTCCAGAGTTCTTTCAGAAGAGAGAAGCTGGAACAAAAGTCCCCAGATTCTAAGGCACTCCAGGAAGACTCACCTGGAGTGAGACAGAAGGTCTATGATTGCCAGGAGTGTGGGAAGTCTTTCCGTCAGAAAGGTAGTCTAACATTGCACGAGAGAATCCACACTGGTCAGAAGCCCTTTGAGTGCACCCAGTGTGGAAAAAGCTTCAGGGCCAAAGGCAATCTAGTCACACATCAGCGAATACACACGGGAGAGAAGCCCTATCAGTGCAAAGAGTGTGGGAAAAGCTTTAGTCAGCGAGGCAGTCTAGCTGTCCATGAGAGACTCCACACTGGACAGAAACCCTACGAATGTGCCATTTGCCAGAGAAGCTTCAGGAATCAGAGTAACCTTGCTGTTCACCGAAGAGTCCACAGTGGTGAGAAGCCCTATAGATGTGACCAGTGTGGAAAAGCTTTCAGTCAGAAAGGAAGCTTAATTGTTCACATCAGAGTTCACACGGGTCTGAAGCCCTATGCGTGTTCCCACTGCAGGAAGAGCTTCCACACCAGGGGGAATTGTATTCTGCATGGAAAAATCCACACGGGAGAGACACCCTACCTCTGTGGCCAATGTGGAAAAAGTTTCACTCAGAGAGGGAGCCTGGCTGTGCACCAACGAAGCTGCTCACAACGGCTCACTCTGTAAGCACTCTCTTCAAAGGCAGTTCTTCTTACAAATTAAGAGTACAGAATCCTCTGTAATCAAGAATTTTATCCAGTGTCGTAGGGTAAGTGGAAGTTCTTTCAGAAGGACCAGCATTTAATAGGGCAGACTGACTTTTCTCCCTTTCCCCCAAATGAATATGAAAAATAAATGTCCTGTTTATC

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000023065:ENSRNOT00000038521:2

Average complexity

IR

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.084

Domain overlap (PFAM):

C1:

NO

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=10.0),PF079757=C1_4=WD(100=21.6),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=10.4),PF0013017=C1_1=WD(100=26.0),PF134651=zf-H2C2_2=WD(100=10.4),PF0009621=zf-C2H2=WD(100=9.2)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSRNOP00000037628